These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

387 related articles for article (PubMed ID: 18640688)

  • 1. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.
    Chaudhury S; Gray JJ
    J Mol Biol; 2008 Sep; 381(4):1068-87. PubMed ID: 18640688
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient flexible backbone protein-protein docking for challenging targets.
    Marze NA; Roy Burman SS; Sheffler W; Gray JJ
    Bioinformatics; 2018 Oct; 34(20):3461-3469. PubMed ID: 29718115
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Monte Carlo replica-exchange based ensemble docking of protein conformations.
    Zhang Z; Ehmann U; Zacharias M
    Proteins; 2017 May; 85(5):924-937. PubMed ID: 28168752
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Pushing the Backbone in Protein-Protein Docking.
    Kuroda D; Gray JJ
    Structure; 2016 Oct; 24(10):1821-1829. PubMed ID: 27568930
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FiberDock: Flexible induced-fit backbone refinement in molecular docking.
    Mashiach E; Nussinov R; Wolfson HJ
    Proteins; 2010 May; 78(6):1503-19. PubMed ID: 20077569
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein-protein docking with multiple residue conformations and residue substitutions.
    Lorber DM; Udo MK; Shoichet BK
    Protein Sci; 2002 Jun; 11(6):1393-408. PubMed ID: 12021438
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Flexible ligand docking using conformational ensembles.
    Lorber DM; Shoichet BK
    Protein Sci; 1998 Apr; 7(4):938-50. PubMed ID: 9568900
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M; Chaleil RA; Tournier AL; Bates PA
    Proteins; 2007 Dec; 69(4):750-7. PubMed ID: 17671977
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Incorporating backbone flexibility in MedusaDock improves ligand-binding pose prediction in the CSAR2011 docking benchmark.
    Ding F; Dokholyan NV
    J Chem Inf Model; 2013 Aug; 53(8):1871-9. PubMed ID: 23237273
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient molecular docking of NMR structures: application to HIV-1 protease.
    Huang SY; Zou X
    Protein Sci; 2007 Jan; 16(1):43-51. PubMed ID: 17123961
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM; Gabb HA; Sternberg MJ
    J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Minimal ensembles of side chain conformers for modeling protein-protein interactions.
    Beglov D; Hall DR; Brenke R; Shapovalov MV; Dunbrack RL; Kozakov D; Vajda S
    Proteins; 2012 Feb; 80(2):591-601. PubMed ID: 22105850
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Benchmarking and analysis of protein docking performance in Rosetta v3.2.
    Chaudhury S; Berrondo M; Weitzner BD; Muthu P; Bergman H; Gray JJ
    PLoS One; 2011; 6(8):e22477. PubMed ID: 21829626
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12.
    Chaudhury S; Sircar A; Sivasubramanian A; Berrondo M; Gray JJ
    Proteins; 2007 Dec; 69(4):793-800. PubMed ID: 17894347
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.
    Chen H; Sun Y; Shen Y
    Proteins; 2017 Mar; 85(3):544-556. PubMed ID: 27862345
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein-protein docking with backbone flexibility.
    Wang C; Bradley P; Baker D
    J Mol Biol; 2007 Oct; 373(2):503-19. PubMed ID: 17825317
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.