These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

405 related articles for article (PubMed ID: 18642894)

  • 1. An anchor-dependent molecular docking process for docking small flexible molecules into rigid protein receptors.
    Lin TH; Lin GL
    J Chem Inf Model; 2008 Aug; 48(8):1638-55. PubMed ID: 18642894
    [TBL] [Abstract][Full Text] [Related]  

  • 2. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein flexibility in ligand docking and virtual screening to protein kinases.
    Cavasotto CN; Abagyan RA
    J Mol Biol; 2004 Mar; 337(1):209-25. PubMed ID: 15001363
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Examination of shape complementarity in docking of unbound proteins.
    Norel R; Petrey D; Wolfson HJ; Nussinov R
    Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Development and evaluation of a generic evolutionary method for protein-ligand docking.
    Yang JM
    J Comput Chem; 2004 Apr; 25(6):843-57. PubMed ID: 15011256
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Lead finder: an approach to improve accuracy of protein-ligand docking, binding energy estimation, and virtual screening.
    Stroganov OV; Novikov FN; Stroylov VS; Kulkov V; Chilov GG
    J Chem Inf Model; 2008 Dec; 48(12):2371-85. PubMed ID: 19007114
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fully automated molecular mechanics based induced fit protein-ligand docking method.
    Koska J; Spassov VZ; Maynard AJ; Yan L; Austin N; Flook PK; Venkatachalam CM
    J Chem Inf Model; 2008 Oct; 48(10):1965-73. PubMed ID: 18816046
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
    Kämper A; Apostolakis J; Rarey M; Marian CM; Lengauer T
    J Chem Inf Model; 2006; 46(2):903-11. PubMed ID: 16563022
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine.
    Jain AN
    J Med Chem; 2003 Feb; 46(4):499-511. PubMed ID: 12570372
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GEMDOCK: a generic evolutionary method for molecular docking.
    Yang JM; Chen CC
    Proteins; 2004 May; 55(2):288-304. PubMed ID: 15048822
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm.
    Wu G; Robertson DH; Brooks CL; Vieth M
    J Comput Chem; 2003 Oct; 24(13):1549-62. PubMed ID: 12925999
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A critical assessment of docking programs and scoring functions.
    Warren GL; Andrews CW; Capelli AM; Clarke B; LaLonde J; Lambert MH; Lindvall M; Nevins N; Semus SF; Senger S; Tedesco G; Wall ID; Woolven JM; Peishoff CE; Head MS
    J Med Chem; 2006 Oct; 49(20):5912-31. PubMed ID: 17004707
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A flexible approach to induced fit docking.
    Nabuurs SB; Wagener M; de Vlieg J
    J Med Chem; 2007 Dec; 50(26):6507-18. PubMed ID: 18031000
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular docking of balanol to dynamics snapshots of protein kinase A.
    Wong CF; Kua J; Zhang Y; Straatsma TP; McCammon JA
    Proteins; 2005 Dec; 61(4):850-8. PubMed ID: 16245317
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effect of input differences on the results of docking calculations.
    Feher M; Williams CI
    J Chem Inf Model; 2009 Jul; 49(7):1704-14. PubMed ID: 19530660
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Flexible ligand docking: a multistep strategy approach.
    Wang J; Kollman PA; Kuntz ID
    Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FLIPDock: docking flexible ligands into flexible receptors.
    Zhao Y; Sanner MF
    Proteins; 2007 Aug; 68(3):726-37. PubMed ID: 17523154
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Novel procedure for modeling ligand/receptor induced fit effects.
    Sherman W; Day T; Jacobson MP; Friesner RA; Farid R
    J Med Chem; 2006 Jan; 49(2):534-53. PubMed ID: 16420040
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.