147 related articles for article (PubMed ID: 18643548)
1. Supercoiling and denaturation of DNA loops.
Liverpool TB; Harris SA; Laughton CA
Phys Rev Lett; 2008 Jun; 100(23):238103. PubMed ID: 18643548
[TBL] [Abstract][Full Text] [Related]
2. Denaturation of circular DNA: supercoils and overtwist.
Bar A; Kabakçıoğlu A; Mukamel D
Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Dec; 86(6 Pt 1):061904. PubMed ID: 23367973
[TBL] [Abstract][Full Text] [Related]
3. Twist-writhe partitioning in a coarse-grained DNA minicircle model.
Sayar M; Avşaroğlu B; Kabakçioğlu A
Phys Rev E Stat Nonlin Soft Matter Phys; 2010 Apr; 81(4 Pt 1):041916. PubMed ID: 20481762
[TBL] [Abstract][Full Text] [Related]
4. Single cell mechanics: stress stiffening and kinematic hardening.
Fernández P; Ott A
Phys Rev Lett; 2008 Jun; 100(23):238102. PubMed ID: 18643547
[TBL] [Abstract][Full Text] [Related]
5. Extracting DNA twist rigidity from experimental supercoiling data.
Neukirch S
Phys Rev Lett; 2004 Nov; 93(19):198107. PubMed ID: 15600890
[TBL] [Abstract][Full Text] [Related]
6. Supercoiling and local denaturation of plasmids with a minimalist DNA model.
Trovato F; Tozzini V
J Phys Chem B; 2008 Oct; 112(42):13197-200. PubMed ID: 18826184
[TBL] [Abstract][Full Text] [Related]
7. Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation.
Sutthibutpong T; Matek C; Benham C; Slade GG; Noy A; Laughton C; K Doye JP; Louis AA; Harris SA
Nucleic Acids Res; 2016 Nov; 44(19):9121-9130. PubMed ID: 27664220
[TBL] [Abstract][Full Text] [Related]
8. Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.
Matek C; Ouldridge TE; Doye JP; Louis AA
Sci Rep; 2015 Jan; 5():7655. PubMed ID: 25563652
[TBL] [Abstract][Full Text] [Related]
9. Supercoiling induces denaturation bubbles in circular DNA.
Jeon JH; Adamcik J; Dietler G; Metzler R
Phys Rev Lett; 2010 Nov; 105(20):208101. PubMed ID: 21231267
[TBL] [Abstract][Full Text] [Related]
10. Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations.
Harris SA; Laughton CA; Liverpool TB
Nucleic Acids Res; 2008 Jan; 36(1):21-9. PubMed ID: 17984075
[TBL] [Abstract][Full Text] [Related]
11. Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA.
Mielke SP; Grønbech-Jensen N; Krishnan VV; Fink WH; Benham CJ
J Chem Phys; 2005 Sep; 123(12):124911. PubMed ID: 16392531
[TBL] [Abstract][Full Text] [Related]
12. The dependence of DNA supercoiling on solution electrostatics.
Argudo D; Purohit PK
Acta Biomater; 2012 Jul; 8(6):2133-43. PubMed ID: 22330280
[TBL] [Abstract][Full Text] [Related]
13. Supercoil formation in DNA denaturation.
Kabakçioğlu A; Orlandini E; Mukamel D
Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Jul; 80(1 Pt 1):010903. PubMed ID: 19658646
[TBL] [Abstract][Full Text] [Related]
14. Macroscopic loop formation in circular DNA denaturation.
Kabakçıoğlu A; Bar A; Mukamel D
Phys Rev E Stat Nonlin Soft Matter Phys; 2012 May; 85(5 Pt 1):051919. PubMed ID: 23004799
[TBL] [Abstract][Full Text] [Related]
15. Influence of supercoiling on the disruption of dsDNA.
Chitanvis SM; Welch PM
J Chem Phys; 2005 Sep; 123(12):124901. PubMed ID: 16392521
[TBL] [Abstract][Full Text] [Related]
16. Probing the elasticity of DNA on short length scales by modeling supercoiling under tension.
Schöpflin R; Brutzer H; Müller O; Seidel R; Wedemann G
Biophys J; 2012 Jul; 103(2):323-30. PubMed ID: 22853910
[TBL] [Abstract][Full Text] [Related]
17. Fluctuations and supercoiling of DNA.
Marko JF; Siggia ED
Science; 1994 Jul; 265(5171):506-8. PubMed ID: 8036491
[TBL] [Abstract][Full Text] [Related]
18. Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics.
Starr CH; Bryant Z; Spakowitz AJ
Biophys J; 2022 May; 121(10):1949-1962. PubMed ID: 35421389
[TBL] [Abstract][Full Text] [Related]
19. Dynamical control of denaturation bubble nucleation in supercoiled DNA minicircles.
Sicard F; Destainville N; Rousseau P; Tardin C; Manghi M
Phys Rev E; 2020 Jan; 101(1-1):012403. PubMed ID: 32069623
[TBL] [Abstract][Full Text] [Related]
20. Terminal twist-induced writhe of DNA with intrinsic curvature.
Hu K
Bull Math Biol; 2007 Apr; 69(3):1019-30. PubMed ID: 17377833
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
