BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

160 related articles for article (PubMed ID: 18670040)

  • 1. Reconstruction of 3D structures from protein contact maps.
    Vassura M; Margara L; Di Lena P; Medri F; Fariselli P; Casadio R
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(3):357-67. PubMed ID: 18670040
    [TBL] [Abstract][Full Text] [Related]  

  • 2. FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.
    Vassura M; Margara L; Di Lena P; Medri F; Fariselli P; Casadio R
    Bioinformatics; 2008 May; 24(10):1313-5. PubMed ID: 18381401
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Con-Struct Map: a comparative contact map analysis tool.
    Chung JL; Beaver JE; Scheeff ED; Bourne PE
    Bioinformatics; 2007 Sep; 23(18):2491-2. PubMed ID: 17709340
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A bi-recursive neural network architecture for the prediction of protein coarse contact maps.
    Vullo A; Frasconi P
    Proc IEEE Comput Soc Bioinform Conf; 2002; 1():187-96. PubMed ID: 15838135
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Properties of contact matrices induced by pairwise interactions in proteins.
    Miyazawa S; Kinjo AR
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 May; 77(5 Pt 1):051910. PubMed ID: 18643105
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Consensus contact prediction by linear programming.
    Gao X; Bu D; Li SC; Li M; Xu J
    Comput Syst Bioinformatics Conf; 2007; 6():323-34. PubMed ID: 17951835
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Striped sheets and protein contact prediction.
    MacCallum RM
    Bioinformatics; 2004 Aug; 20 Suppl 1():i224-31. PubMed ID: 15262803
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.
    Pietal MJ; Bujnicki JM; Kozlowski LP
    Bioinformatics; 2015 Nov; 31(21):3499-505. PubMed ID: 26130575
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
    Pietal MJ; Tuszynska I; Bujnicki JM
    Bioinformatics; 2007 Jun; 23(11):1429-30. PubMed ID: 17400727
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Recoverable one-dimensional encoding of three-dimensional protein structures.
    Kinjo AR; Nishikawa K
    Bioinformatics; 2005 May; 21(10):2167-70. PubMed ID: 15722374
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein folding is a convergent problem!
    Das Gupta D; Kaushik R; Jayaram B
    Biochem Biophys Res Commun; 2016 Nov; 480(4):741-744. PubMed ID: 27983988
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A two-stage approach for improved prediction of residue contact maps.
    Vullo A; Walsh I; Pollastri G
    BMC Bioinformatics; 2006 Mar; 7():180. PubMed ID: 16573808
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models.
    Ekeberg M; Lövkvist C; Lan Y; Weigt M; Aurell E
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 Jan; 87(1):012707. PubMed ID: 23410359
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein complexes: structure prediction challenges for the 21st century.
    Aloy P; Pichaud M; Russell RB
    Curr Opin Struct Biol; 2005 Feb; 15(1):15-22. PubMed ID: 15718128
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Visualization of unfavorable interactions in protein folds.
    Weichenberger CX; Byzia P; Sippl MJ
    Bioinformatics; 2008 May; 24(9):1206-7. PubMed ID: 18375963
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Long-range information and physicality constraints improve predicted protein contact maps.
    Martin AJ; Baù D; Vullo A; Walsh I; Pollastri G
    J Bioinform Comput Biol; 2008 Oct; 6(5):1001-20. PubMed ID: 18942163
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage.
    Garzón JI; Kovacs J; Abagyan R; Chacón P
    Bioinformatics; 2007 Feb; 23(4):427-33. PubMed ID: 17150992
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Thermodynamics of folding and association of lattice-model proteins.
    Cellmer T; Bratko D; Prausnitz JM; Blanch H
    J Chem Phys; 2005 May; 122(17):174908. PubMed ID: 15910070
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evolution and similarity evaluation of protein structures in contact map space.
    Gupta N; Mangal N; Biswas S
    Proteins; 2005 May; 59(2):196-204. PubMed ID: 15726585
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.