These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 18684737)

  • 21. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
    Lu CL; Chen KT; Huang SY; Chiu HT
    BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
    [TBL] [Abstract][Full Text] [Related]  

  • 22. OSLay: optimal syntenic layout of unfinished assemblies.
    Richter DC; Schuster SC; Huson DH
    Bioinformatics; 2007 Jul; 23(13):1573-9. PubMed ID: 17463020
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Tracembler--software for in-silico chromosome walking in unassembled genomes.
    Dong Q; Wilkerson MD; Brendel V
    BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
    [TBL] [Abstract][Full Text] [Related]  

  • 24. ScaffMatch: scaffolding algorithm based on maximum weight matching.
    Mandric I; Zelikovsky A
    Bioinformatics; 2015 Aug; 31(16):2632-8. PubMed ID: 25890305
    [TBL] [Abstract][Full Text] [Related]  

  • 25. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 26. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
    Kosugi S; Hirakawa H; Tabata S
    Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MOM: maximum oligonucleotide mapping.
    Eaves HL; Gao Y
    Bioinformatics; 2009 Apr; 25(7):969-70. PubMed ID: 19228804
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
    Blom J; Jakobi T; Doppmeier D; Jaenicke S; Kalinowski J; Stoye J; Goesmann A
    Bioinformatics; 2011 May; 27(10):1351-8. PubMed ID: 21450712
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A distributed environment for physical map construction.
    Grigoriev A; Levin A; Lehrach H
    Bioinformatics; 1998; 14(3):252-8. PubMed ID: 9614268
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Fast and memory efficient approach for mapping NGS reads to a reference genome.
    Kumar S; Agarwal S; Ranvijay
    J Bioinform Comput Biol; 2019 Apr; 17(2):1950008. PubMed ID: 31057068
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Mapping short DNA sequencing reads and calling variants using mapping quality scores.
    Li H; Ruan J; Durbin R
    Genome Res; 2008 Nov; 18(11):1851-8. PubMed ID: 18714091
    [TBL] [Abstract][Full Text] [Related]  

  • 32. AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.
    Zheng Q; Grice EA
    PLoS Comput Biol; 2016 Oct; 12(10):e1005096. PubMed ID: 27706155
    [TBL] [Abstract][Full Text] [Related]  

  • 33. U
    Castro CJ; Ng TFF
    J Comput Biol; 2017 Nov; 24(11):1071-1080. PubMed ID: 28418726
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches.
    Titarenko V; Titarenko S
    BMC Bioinformatics; 2023 Oct; 24(1):396. PubMed ID: 37875804
    [TBL] [Abstract][Full Text] [Related]  

  • 35. S-conLSH: alignment-free gapped mapping of noisy long reads.
    Chakraborty A; Morgenstern B; Bandyopadhyay S
    BMC Bioinformatics; 2021 Feb; 22(1):64. PubMed ID: 33573603
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Methods for assembling reads and producing contigs.
    Orlandini V; Fondi M; Fani R
    Methods Mol Biol; 2015; 1231():151-61. PubMed ID: 25343864
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Assembly reconciliation.
    Zimin AV; Smith DR; Sutton G; Yorke JA
    Bioinformatics; 2008 Jan; 24(1):42-5. PubMed ID: 18057021
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Computational techniques for human genome resequencing using mated gapped reads.
    Carnevali P; Baccash J; Halpern AL; Nazarenko I; Nilsen GB; Pant KP; Ebert JC; Brownley A; Morenzoni M; Karpinchyk V; Martin B; Ballinger DG; Drmanac R
    J Comput Biol; 2012 Mar; 19(3):279-92. PubMed ID: 22175250
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
    Limasset A; Flot JF; Peterlongo P
    Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.