654 related articles for article (PubMed ID: 18692976)
1. The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Yarza P; Richter M; Peplies J; Euzeby J; Amann R; Schleifer KH; Ludwig W; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2008 Sep; 31(4):241-50. PubMed ID: 18692976
[TBL] [Abstract][Full Text] [Related]
2. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses.
Yarza P; Ludwig W; Euzéby J; Amann R; Schleifer KH; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2010 Oct; 33(6):291-9. PubMed ID: 20817437
[TBL] [Abstract][Full Text] [Related]
3. Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains.
Ludwig W; Viver T; Westram R; Francisco Gago J; Bustos-Caparros E; Knittel K; Amann R; Rossello-Mora R
Syst Appl Microbiol; 2021 Jul; 44(4):126218. PubMed ID: 34111737
[TBL] [Abstract][Full Text] [Related]
4. The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.
Yilmaz P; Parfrey LW; Yarza P; Gerken J; Pruesse E; Quast C; Schweer T; Peplies J; Ludwig W; Glöckner FO
Nucleic Acids Res; 2014 Jan; 42(Database issue):D643-8. PubMed ID: 24293649
[TBL] [Abstract][Full Text] [Related]
5. 25 years of serving the community with ribosomal RNA gene reference databases and tools.
Glöckner FO; Yilmaz P; Quast C; Gerken J; Beccati A; Ciuprina A; Bruns G; Yarza P; Peplies J; Westram R; Ludwig W
J Biotechnol; 2017 Nov; 261():169-176. PubMed ID: 28648396
[TBL] [Abstract][Full Text] [Related]
6. Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.
Amaral-Zettler L; Peplies J; Ramette A; Fuchs B; Ludwig W; Glöckner FO
Syst Appl Microbiol; 2008 Sep; 31(4):258-68. PubMed ID: 18922366
[TBL] [Abstract][Full Text] [Related]
7. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.
Yarza P; Yilmaz P; Pruesse E; Glöckner FO; Ludwig W; Schleifer KH; Whitman WB; Euzéby J; Amann R; Rosselló-Móra R
Nat Rev Microbiol; 2014 Sep; 12(9):635-45. PubMed ID: 25118885
[TBL] [Abstract][Full Text] [Related]
8. leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.
Flandrois JP; Perrière G; Gouy M
BMC Bioinformatics; 2015 Aug; 16(1):251. PubMed ID: 26264559
[TBL] [Abstract][Full Text] [Related]
9. Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names.
Yarza P; Spröer C; Swiderski J; Mrotzek N; Spring S; Tindall BJ; Gronow S; Pukall R; Klenk HP; Lang E; Verbarg S; Crouch A; Lilburn T; Beck B; Unosson C; Cardew S; Moore ER; Gomila M; Nakagawa Y; Janssens D; De Vos P; Peiren J; Suttels T; Clermont D; Bizet C; Sakamoto M; Iida T; Kudo T; Kosako Y; Oshida Y; Ohkuma M; R Arahal D; Spieck E; Pommerening Roeser A; Figge M; Park D; Buchanan P; Cifuentes A; Munoz R; Euzéby JP; Schleifer KH; Ludwig W; Amann R; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2013 Feb; 36(1):69-73. PubMed ID: 23410935
[TBL] [Abstract][Full Text] [Related]
10. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.
Chun J; Lee JH; Jung Y; Kim M; Kim S; Kim BK; Lim YW
Int J Syst Evol Microbiol; 2007 Oct; 57(Pt 10):2259-2261. PubMed ID: 17911292
[TBL] [Abstract][Full Text] [Related]
11. Release LTPs104 of the All-Species Living Tree.
Munoz R; Yarza P; Ludwig W; Euzéby J; Amann R; Schleifer KH; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2011 May; 34(3):169-70. PubMed ID: 21497273
[No Abstract] [Full Text] [Related]
12. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Pruesse E; Quast C; Knittel K; Fuchs BM; Ludwig W; Peplies J; Glöckner FO
Nucleic Acids Res; 2007; 35(21):7188-96. PubMed ID: 17947321
[TBL] [Abstract][Full Text] [Related]
13. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy.
Cole JR; Chai B; Marsh TL; Farris RJ; Wang Q; Kulam SA; Chandra S; McGarrell DM; Schmidt TM; Garrity GM; Tiedje JM;
Nucleic Acids Res; 2003 Jan; 31(1):442-3. PubMed ID: 12520046
[TBL] [Abstract][Full Text] [Related]
14. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.
Yoon SH; Ha SM; Kwon S; Lim J; Kim Y; Seo H; Chun J
Int J Syst Evol Microbiol; 2017 May; 67(5):1613-1617. PubMed ID: 28005526
[TBL] [Abstract][Full Text] [Related]
15. A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.
Peplies J; Kottmann R; Ludwig W; Glöckner FO
Syst Appl Microbiol; 2008 Sep; 31(4):251-7. PubMed ID: 18786793
[TBL] [Abstract][Full Text] [Related]
16. RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
Teeling H; Gloeckner FO
BMC Bioinformatics; 2006 Feb; 7():66. PubMed ID: 16476165
[TBL] [Abstract][Full Text] [Related]
17. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Quast C; Pruesse E; Yilmaz P; Gerken J; Schweer T; Yarza P; Peplies J; Glöckner FO
Nucleic Acids Res; 2013 Jan; 41(Database issue):D590-6. PubMed ID: 23193283
[TBL] [Abstract][Full Text] [Related]
18. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
DeSantis TZ; Hugenholtz P; Larsen N; Rojas M; Brodie EL; Keller K; Huber T; Dalevi D; Hu P; Andersen GL
Appl Environ Microbiol; 2006 Jul; 72(7):5069-72. PubMed ID: 16820507
[TBL] [Abstract][Full Text] [Related]
19. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.
Kim OS; Cho YJ; Lee K; Yoon SH; Kim M; Na H; Park SC; Jeon YS; Lee JH; Yi H; Won S; Chun J
Int J Syst Evol Microbiol; 2012 Mar; 62(Pt 3):716-721. PubMed ID: 22140171
[TBL] [Abstract][Full Text] [Related]
20. LVTree Viewer: An Interactive Display for the All-Species Living Tree Incorporating Automatic Comparison with Prokaryotic Systematics.
Zuo G; Zhi X; Xu Z; Hao B
Genomics Proteomics Bioinformatics; 2016 Apr; 14(2):94-102. PubMed ID: 27018315
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
