151 related articles for article (PubMed ID: 18697772)
21. Genome-scale metabolic networks.
Terzer M; Maynard ND; Covert MW; Stelling J
Wiley Interdiscip Rev Syst Biol Med; 2009; 1(3):285-297. PubMed ID: 20835998
[TBL] [Abstract][Full Text] [Related]
22. Tools-4-Metatool (T4M): online suite of web-tools to process stoichiometric network analysis data from Metatool.
Xavier D; Vázquez S; Higuera C; Morán F; Montero F
Biosystems; 2011 Aug; 105(2):169-72. PubMed ID: 21554926
[TBL] [Abstract][Full Text] [Related]
23. Exhaustive identification of steady state cycles in large stoichiometric networks.
Wright J; Wagner A
BMC Syst Biol; 2008 Jul; 2():61. PubMed ID: 18616835
[TBL] [Abstract][Full Text] [Related]
24. METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
Gille C; Hoffmann S; Holzhütter HG
BMC Syst Biol; 2007 Jan; 1():5. PubMed ID: 17408512
[TBL] [Abstract][Full Text] [Related]
25. Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models.
Jamshidi N; Palsson BØ
Biophys J; 2010 Jan; 98(2):175-85. PubMed ID: 20338839
[TBL] [Abstract][Full Text] [Related]
26. Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae.
Smallbone K; Malys N; Messiha HL; Wishart JA; Simeonidis E
Methods Enzymol; 2011; 500():355-70. PubMed ID: 21943906
[TBL] [Abstract][Full Text] [Related]
27. Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions.
Nikolaev EV; Burgard AP; Maranas CD
Biophys J; 2005 Jan; 88(1):37-49. PubMed ID: 15489308
[TBL] [Abstract][Full Text] [Related]
28. Genomic signal processing: from matrix algebra to genetic networks.
Alter O
Methods Mol Biol; 2007; 377():17-60. PubMed ID: 17634608
[TBL] [Abstract][Full Text] [Related]
29. Flux balance analysis: interrogating genome-scale metabolic networks.
Oberhardt MA; Chavali AK; Papin JA
Methods Mol Biol; 2009; 500():61-80. PubMed ID: 19399432
[TBL] [Abstract][Full Text] [Related]
30. Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.
Pey J; Planes FJ
Bioinformatics; 2014 Aug; 30(15):2197-203. PubMed ID: 24728852
[TBL] [Abstract][Full Text] [Related]
31. TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.
Motamedian E; Mohammadi M; Shojaosadati SA; Heydari M
Bioinformatics; 2017 Apr; 33(7):1057-1063. PubMed ID: 28065897
[TBL] [Abstract][Full Text] [Related]
32. Towards a genome-scale kinetic model of cellular metabolism.
Smallbone K; Simeonidis E; Swainston N; Mendes P
BMC Syst Biol; 2010 Jan; 4():6. PubMed ID: 20109182
[TBL] [Abstract][Full Text] [Related]
33. Toward Synthetic Biology Strategies for Adipic Acid Production: An in Silico Tool for Combined Thermodynamics and Stoichiometric Analysis of Metabolic Networks.
Averesch NJH; Martínez VS; Nielsen LK; Krömer JO
ACS Synth Biol; 2018 Feb; 7(2):490-509. PubMed ID: 29237121
[TBL] [Abstract][Full Text] [Related]
34. AMBIENT: Active Modules for Bipartite Networks--using high-throughput transcriptomic data to dissect metabolic response.
Bryant WA; Sternberg MJ; Pinney JW
BMC Syst Biol; 2013 Mar; 7():26. PubMed ID: 23531303
[TBL] [Abstract][Full Text] [Related]
35. Using chemical organization theory for model checking.
Kaleta C; Richter S; Dittrich P
Bioinformatics; 2009 Aug; 25(15):1915-22. PubMed ID: 19468053
[TBL] [Abstract][Full Text] [Related]
36. Natural computation meta-heuristics for the in silico optimization of microbial strains.
Rocha M; Maia P; Mendes R; Pinto JP; Ferreira EC; Nielsen J; Patil KR; Rocha I
BMC Bioinformatics; 2008 Nov; 9():499. PubMed ID: 19038030
[TBL] [Abstract][Full Text] [Related]
37. Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species.
Pitkänen E; Jouhten P; Hou J; Syed MF; Blomberg P; Kludas J; Oja M; Holm L; Penttilä M; Rousu J; Arvas M
PLoS Comput Biol; 2014 Feb; 10(2):e1003465. PubMed ID: 24516375
[TBL] [Abstract][Full Text] [Related]
38. Minimal cut sets in biochemical reaction networks.
Klamt S; Gilles ED
Bioinformatics; 2004 Jan; 20(2):226-34. PubMed ID: 14734314
[TBL] [Abstract][Full Text] [Related]
39. A practical guide to genome-scale metabolic models and their analysis.
Santos F; Boele J; Teusink B
Methods Enzymol; 2011; 500():509-32. PubMed ID: 21943912
[TBL] [Abstract][Full Text] [Related]
40. Computational modeling of biochemical networks using COPASI.
Mendes P; Hoops S; Sahle S; Gauges R; Dada J; Kummer U
Methods Mol Biol; 2009; 500():17-59. PubMed ID: 19399433
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
