These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

288 related articles for article (PubMed ID: 18698893)

  • 1. Reaction Brownian dynamics and the effect of spatial fluctuations on the gain of a push-pull network.
    Morelli MJ; ten Wolde PR
    J Chem Phys; 2008 Aug; 129(5):054112. PubMed ID: 18698893
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.
    van Zon JS; ten Wolde PR
    J Chem Phys; 2005 Dec; 123(23):234910. PubMed ID: 16392952
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.
    Erban R; Chapman SJ
    Phys Biol; 2009 Aug; 6(4):046001. PubMed ID: 19700812
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields.
    Wylie DC; Hori Y; Dinner AR; Chakraborty AK
    J Phys Chem B; 2006 Jun; 110(25):12749-65. PubMed ID: 16800611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks.
    Ramaswamy R; González-Segredo N; Sbalzarini IF
    J Chem Phys; 2009 Jun; 130(24):244104. PubMed ID: 19566139
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modeling of intramolecular reactions of polymers: an efficient method based on Brownian dynamics simulations.
    Klenin KV; Langowski J
    J Chem Phys; 2004 Sep; 121(10):4951-60. PubMed ID: 15332931
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational methods for diffusion-influenced biochemical reactions.
    Dobrzynski M; Rodríguez JV; Kaandorp JA; Blom JG
    Bioinformatics; 2007 Aug; 23(15):1969-77. PubMed ID: 17537752
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Multiresolution stochastic simulations of reaction-diffusion processes.
    Bayati B; Chatelain P; Koumoutsakos P
    Phys Chem Chem Phys; 2008 Oct; 10(39):5963-6. PubMed ID: 18825283
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks.
    Ramaswamy R; Sbalzarini IF
    J Chem Phys; 2010 Jan; 132(4):044102. PubMed ID: 20113014
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Spatially distributed stochastic systems: Equation-free and equation-assisted preconditioned computations.
    Qiao L; Erban R; Kelley CT; Kevrekidis IG
    J Chem Phys; 2006 Nov; 125(20):204108. PubMed ID: 17144691
    [TBL] [Abstract][Full Text] [Related]  

  • 11. N log N method for hydrodynamic interactions of confined polymer systems: Brownian dynamics.
    Hernández-Ortiz JP; de Pablo JJ; Graham MD
    J Chem Phys; 2006 Oct; 125(16):164906. PubMed ID: 17092138
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient exact and K-skip methods for stochastic simulation of coupled chemical reactions.
    Cai X; Wen J
    J Chem Phys; 2009 Aug; 131(6):064108. PubMed ID: 19691379
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods.
    Ramaswamy R; Sbalzarini IF
    J Chem Phys; 2011 Dec; 135(24):244103. PubMed ID: 22225140
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A soft collision detection algorithm for simple Brownian dynamics.
    Taylor WR; Katsimitsoulia Z
    Comput Biol Chem; 2010 Feb; 34(1):1-10. PubMed ID: 20060784
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Eliminating fast reactions in stochastic simulations of biochemical networks: a bistable genetic switch.
    Morelli MJ; Allen RJ; Tănase-Nicola S; ten Wolde PR
    J Chem Phys; 2008 Jan; 128(4):045105. PubMed ID: 18248012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Single-file dynamics with different diffusion constants.
    Ambjörnsson T; Lizana L; Lomholt MA; Silbey RJ
    J Chem Phys; 2008 Nov; 129(18):185106. PubMed ID: 19045434
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.
    Gómez-Uribe CA; Verghese GC
    J Chem Phys; 2007 Jan; 126(2):024109. PubMed ID: 17228945
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Quantum Brownian motion with large friction.
    Ankerhold J; Grabert H; Pechukas P
    Chaos; 2005 Jun; 15(2):26106. PubMed ID: 16035908
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks.
    Slepoy A; Thompson AP; Plimpton SJ
    J Chem Phys; 2008 May; 128(20):205101. PubMed ID: 18513044
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient stochastic sampling of first-passage times with applications to self-assembly simulations.
    Misra N; Schwartz R
    J Chem Phys; 2008 Nov; 129(20):204109. PubMed ID: 19045854
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.