118 related articles for article (PubMed ID: 18710871)
1. Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison.
Dai Q; Yang Y; Wang T
Bioinformatics; 2008 Oct; 24(20):2296-302. PubMed ID: 18710871
[TBL] [Abstract][Full Text] [Related]
2. Comparison study on k-word statistical measures for protein: from sequence to 'sequence space'.
Dai Q; Wang T
BMC Bioinformatics; 2008 Sep; 9():394. PubMed ID: 18811946
[TBL] [Abstract][Full Text] [Related]
3. A novel statistical measure for sequence comparison on the basis of k-word counts.
Yang X; Wang T
J Theor Biol; 2013 Feb; 318():91-100. PubMed ID: 23147229
[TBL] [Abstract][Full Text] [Related]
4. Using Markov model to improve word normalization algorithm for biological sequence comparison.
Dai Q; Liu X; Yao Y; Zhao F
Amino Acids; 2012 May; 42(5):1867-77. PubMed ID: 21505825
[TBL] [Abstract][Full Text] [Related]
5. Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison.
Dai Q; Liu X; Yao Y; Zhao F
J Theor Biol; 2011 May; 276(1):174-80. PubMed ID: 21334347
[TBL] [Abstract][Full Text] [Related]
6. An efficient binomial model-based measure for sequence comparison and its application.
Liu X; Dai Q; Li L; He Z
J Biomol Struct Dyn; 2011 Apr; 28(5):833-43. PubMed ID: 21294594
[TBL] [Abstract][Full Text] [Related]
7. Detecting distant homologs using phylogenetic tree-based HMMs.
Qian B; Goldstein RA
Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
[TBL] [Abstract][Full Text] [Related]
8. Weighted relative entropy for alignment-free sequence comparison based on Markov model.
Chang G; Wang T
J Biomol Struct Dyn; 2011 Feb; 28(4):545-55. PubMed ID: 21142223
[TBL] [Abstract][Full Text] [Related]
9. A statistical method for alignment-free comparison of regulatory sequences.
Kantorovitz MR; Robinson GE; Sinha S
Bioinformatics; 2007 Jul; 23(13):i249-55. PubMed ID: 17646303
[TBL] [Abstract][Full Text] [Related]
10. Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
Ferragina P; Giancarlo R; Greco V; Manzini G; Valiente G
BMC Bioinformatics; 2007 Jul; 8():252. PubMed ID: 17629909
[TBL] [Abstract][Full Text] [Related]
11. Applications of hidden Markov models for characterization of homologous DNA sequences with a common gene.
Hobolth A; Jensen JL
J Comput Biol; 2005 Mar; 12(2):186-203. PubMed ID: 15767776
[TBL] [Abstract][Full Text] [Related]
12. The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform.
Yang L; Zhang X; Wang T
J Theor Biol; 2010 Feb; 262(4):742-9. PubMed ID: 19903487
[TBL] [Abstract][Full Text] [Related]
13. Using Gaussian model to improve biological sequence comparison.
Dai Q; Liu X; Li L; Yao Y; Han B; Zhu L
J Comput Chem; 2010 Jan; 31(2):351-61. PubMed ID: 19479732
[TBL] [Abstract][Full Text] [Related]
14. An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
Lunter GA; Miklós I; Song YS; Hein J
J Comput Biol; 2003; 10(6):869-89. PubMed ID: 14980015
[TBL] [Abstract][Full Text] [Related]
15. Alignment-free comparison of genome sequences by a new numerical characterization.
Huang G; Zhou H; Li Y; Xu L
J Theor Biol; 2011 Jul; 281(1):107-12. PubMed ID: 21536050
[TBL] [Abstract][Full Text] [Related]
16. Alignment free comparison: k word voting model and its applications.
Yang L; Zhang X; Zhu H
J Theor Biol; 2013 Oct; 335():276-82. PubMed ID: 23850481
[TBL] [Abstract][Full Text] [Related]
17. Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word.
Yang L; Zhang X; Zhu H
J Theor Biol; 2012 Feb; 295():125-31. PubMed ID: 22138094
[TBL] [Abstract][Full Text] [Related]
18. A complexity-based method to compare RNA secondary structures and its application.
Zhang S; Wang T
J Biomol Struct Dyn; 2010 Oct; 28(2):247-58. PubMed ID: 20645657
[TBL] [Abstract][Full Text] [Related]
19. Pattern recognition and probabilistic measures in alignment-free sequence analysis.
Schwende I; Pham TD
Brief Bioinform; 2014 May; 15(3):354-68. PubMed ID: 24096012
[TBL] [Abstract][Full Text] [Related]
20. Extraction of high quality k-words for alignment-free sequence comparison.
Gunasinghe U; Alahakoon D; Bedingfield S
J Theor Biol; 2014 Oct; 358():31-51. PubMed ID: 24846728
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]