These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

255 related articles for article (PubMed ID: 18718941)

  • 1. Empirical profile mixture models for phylogenetic reconstruction.
    Quang le S; Gascuel O; Lartillot N
    Bioinformatics; 2008 Oct; 24(20):2317-23. PubMed ID: 18718941
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny.
    Wang HC; Li K; Susko E; Roger AJ
    BMC Evol Biol; 2008 Dec; 8():331. PubMed ID: 19087270
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Phylogenetic mixture models for proteins.
    Le SQ; Lartillot N; Gascuel O
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3965-76. PubMed ID: 18852096
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An expectation maximization algorithm for training hidden substitution models.
    Holmes I; Rubin GM
    J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An improved general amino acid replacement matrix.
    Le SQ; Gascuel O
    Mol Biol Evol; 2008 Jul; 25(7):1307-20. PubMed ID: 18367465
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A collection of amino acid replacement matrices derived from clusters of orthologs.
    Olsen R; Loomis WF
    J Mol Evol; 2005 Nov; 61(5):659-65. PubMed ID: 16245010
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment.
    Lartillot N; Rodrigue N; Stubbs D; Richer J
    Syst Biol; 2013 Jul; 62(4):611-5. PubMed ID: 23564032
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
    Dang CC; Le VS; Gascuel O; Hazes B; Le QS
    BMC Bioinformatics; 2014 Oct; 15(1):341. PubMed ID: 25344302
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model.
    Lartillot N; Brinkmann H; Philippe H
    BMC Evol Biol; 2007 Feb; 7 Suppl 1(Suppl 1):S4. PubMed ID: 17288577
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
    Lartillot N; Lepage T; Blanquart S
    Bioinformatics; 2009 Sep; 25(17):2286-8. PubMed ID: 19535536
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The impact of multiple protein sequence alignment on phylogenetic estimation.
    Wang LS; Leebens-Mack J; Kerr Wall P; Beckmann K; dePamphilis CW; Warnow T
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(4):1108-19. PubMed ID: 21566256
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
    Whelan S; Goldman N
    Mol Biol Evol; 2001 May; 18(5):691-9. PubMed ID: 11319253
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phylogeny of mixture models: robustness of maximum likelihood and non-identifiable distributions.
    Stefankovic D; Vigoda E
    J Comput Biol; 2007 Mar; 14(2):156-89. PubMed ID: 17456014
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
    Waddell PJ; Kishino H; Ota R
    Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Empirical codon substitution matrix.
    Schneider A; Cannarozzi GM; Gonnet GH
    BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MtPAN(3): site-class specific amino acid replacement matrices for mitochondrial proteins of Pancrustacea and Collembola.
    Nardi F; Liò P; Carapelli A; Frati F
    Mol Phylogenet Evol; 2014 Jun; 75():239-44. PubMed ID: 24525199
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.