115 related articles for article (PubMed ID: 18718945)
1. Local coherence in genetic interaction patterns reveals prevalent functional versatility.
Pu S; Ronen K; Vlasblom J; Greenblatt J; Wodak SJ
Bioinformatics; 2008 Oct; 24(20):2376-83. PubMed ID: 18718945
[TBL] [Abstract][Full Text] [Related]
2. Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.
Qian J; Dolled-Filhart M; Lin J; Yu H; Gerstein M
J Mol Biol; 2001 Dec; 314(5):1053-66. PubMed ID: 11743722
[TBL] [Abstract][Full Text] [Related]
3. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile.
Schuldiner M; Collins SR; Thompson NJ; Denic V; Bhamidipati A; Punna T; Ihmels J; Andrews B; Boone C; Greenblatt JF; Weissman JS; Krogan NJ
Cell; 2005 Nov; 123(3):507-19. PubMed ID: 16269340
[TBL] [Abstract][Full Text] [Related]
4. AVID: an integrative framework for discovering functional relationships among proteins.
Jiang T; Keating AE
BMC Bioinformatics; 2005 Jun; 6():136. PubMed ID: 15929793
[TBL] [Abstract][Full Text] [Related]
5. Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions.
Schuldiner M; Collins SR; Weissman JS; Krogan NJ
Methods; 2006 Dec; 40(4):344-52. PubMed ID: 17101447
[TBL] [Abstract][Full Text] [Related]
6. Extracting between-pathway models from E-MAP interactions using expected graph compression.
Kelley DR; Kingsford C
J Comput Biol; 2011 Mar; 18(3):379-90. PubMed ID: 21385041
[TBL] [Abstract][Full Text] [Related]
7. Quantitative inference of dynamic regulatory pathways via microarray data.
Chang WC; Li CW; Chen BS
BMC Bioinformatics; 2005 Mar; 6():44. PubMed ID: 15748298
[TBL] [Abstract][Full Text] [Related]
8. An E-MAP of the ER.
Conibear E
Cell; 2005 Nov; 123(3):366-8. PubMed ID: 16269327
[TBL] [Abstract][Full Text] [Related]
9. Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.
Ray SS; Bandyopadhyay S; Pal SK
IEEE Trans Biomed Eng; 2009 Feb; 56(2):229-36. PubMed ID: 19272921
[TBL] [Abstract][Full Text] [Related]
10. Modular epistasis in yeast metabolism.
Segrè D; Deluna A; Church GM; Kishony R
Nat Genet; 2005 Jan; 37(1):77-83. PubMed ID: 15592468
[TBL] [Abstract][Full Text] [Related]
11. Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions.
Chua HN; Sung WK; Wong L
Bioinformatics; 2006 Jul; 22(13):1623-30. PubMed ID: 16632496
[TBL] [Abstract][Full Text] [Related]
12. The advantage of functional prediction based on clustering of yeast genes and its correlation with non-sequence based classifications.
Bilu Y; Linial M
J Comput Biol; 2002; 9(2):193-210. PubMed ID: 12015877
[TBL] [Abstract][Full Text] [Related]
13. Construction of gene networks with hybrid approach from expression profile and gene ontology.
Jing L; Ng MK; Liu Y
IEEE Trans Inf Technol Biomed; 2010 Jan; 14(1):107-18. PubMed ID: 19789116
[TBL] [Abstract][Full Text] [Related]
14. Clustering gene expression data using adaptive double self-organizing map.
Ressom H; Wang D; Natarajan P
Physiol Genomics; 2003 Jun; 14(1):35-46. PubMed ID: 12672901
[TBL] [Abstract][Full Text] [Related]
15. A novel stepwise analysis procedure of genome-wide expression profiles identifies transcript signatures of thiamine genes as classifiers of mitochondrial mutants.
Eijssen LM; Lindsey PJ; Peeters R; Westra RL; van Eijsden RG; Bolotin-Fukuhara M; Smeets HJ; Vlietinck RF
Yeast; 2008 Feb; 25(2):129-40. PubMed ID: 18081196
[TBL] [Abstract][Full Text] [Related]
16. Towards better accuracy for missing value estimation of epistatic miniarray profiling data by a novel ensemble approach.
Pan XY; Tian Y; Huang Y; Shen HB
Genomics; 2011 May; 97(5):257-64. PubMed ID: 21397683
[TBL] [Abstract][Full Text] [Related]
17. Effective similarity measures for expression profiles.
Yona G; Dirks W; Rahman S; Lin DM
Bioinformatics; 2006 Jul; 22(13):1616-22. PubMed ID: 16595558
[TBL] [Abstract][Full Text] [Related]
18. Improved functional overview of protein complexes using inferred epistatic relationships.
Ryan C; Greene D; Guénolé A; van Attikum H; Krogan NJ; Cunningham P; Cagney G
BMC Syst Biol; 2011 May; 5():80. PubMed ID: 21605386
[TBL] [Abstract][Full Text] [Related]
19. Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.
Babu M; Gagarinova A; Emili A
Methods Mol Biol; 2011; 781():99-126. PubMed ID: 21877280
[TBL] [Abstract][Full Text] [Related]
20. Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.
Zhang C; Liu S; Zhou Y
J Proteome Res; 2006 Apr; 5(4):801-7. PubMed ID: 16602686
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
