488 related articles for article (PubMed ID: 18723574)
21. Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax).
Dueholm MS; Andersen KS; McIlroy SJ; Kristensen JM; Yashiro E; Karst SM; Albertsen M; Nielsen PH
mBio; 2020 Sep; 11(5):. PubMed ID: 32963001
[TBL] [Abstract][Full Text] [Related]
22. Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.
Ritari J; Salojärvi J; Lahti L; de Vos WM
BMC Genomics; 2015 Dec; 16():1056. PubMed ID: 26651617
[TBL] [Abstract][Full Text] [Related]
23. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
[TBL] [Abstract][Full Text] [Related]
24. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.
Kröber M; Bekel T; Diaz NN; Goesmann A; Jaenicke S; Krause L; Miller D; Runte KJ; Viehöver P; Pühler A; Schlüter A
J Biotechnol; 2009 Jun; 142(1):38-49. PubMed ID: 19480946
[TBL] [Abstract][Full Text] [Related]
25. Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment.
Guo F; Ju F; Cai L; Zhang T
PLoS One; 2013; 8(10):e76185. PubMed ID: 24146837
[TBL] [Abstract][Full Text] [Related]
26. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing.
Shin J; Lee S; Go MJ; Lee SY; Kim SC; Lee CH; Cho BK
Sci Rep; 2016 Jul; 6():29681. PubMed ID: 27411898
[TBL] [Abstract][Full Text] [Related]
27. Species-level classification of the vaginal microbiome.
Fettweis JM; Serrano MG; Sheth NU; Mayer CM; Glascock AL; Brooks JP; Jefferson KK; ; Buck GA
BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S17. PubMed ID: 23282177
[TBL] [Abstract][Full Text] [Related]
28. High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts.
Kapustina Ž; Medžiūnė J; Alzbutas G; Rokaitis I; Matjošaitis K; Mackevičius G; Žeimytė S; Karpus L; Lubys A
Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34473015
[TBL] [Abstract][Full Text] [Related]
29. GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis.
Molano L-AG; Vega-Abellaneda S; Manichanh C
mSystems; 2024 Feb; 9(2):e0095023. PubMed ID: 38189256
[TBL] [Abstract][Full Text] [Related]
30. Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics.
Shah N; Tang H; Doak TG; Ye Y
Pac Symp Biocomput; 2011; ():165-76. PubMed ID: 21121044
[TBL] [Abstract][Full Text] [Related]
31. Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies.
Bars-Cortina D; Moratalla-Navarro F; García-Serrano A; Mach N; Riobó-Mayo L; Vea-Barbany J; Rius-Sansalvador B; Murcia S; Obón-Santacana M; Moreno V
Curr Protoc; 2023 Nov; 3(11):e930. PubMed ID: 37988265
[TBL] [Abstract][Full Text] [Related]
32. Short-read full-length 16S rRNA amplicon sequencing for characterisation of the respiratory bacteriome of captive and free-ranging African elephants (Loxodonta africana).
Martin LC; O'Hare MA; Ghielmetti G; Twesigomwe D; Kerr TJ; Gumbo R; Buss PE; Kitchin N; Hemmings SMJ; Miller MA; Goosen WJ
Sci Rep; 2024 Jun; 14(1):14768. PubMed ID: 38926469
[TBL] [Abstract][Full Text] [Related]
33. The feline oral microbiome: a provisional 16S rRNA gene based taxonomy with full-length reference sequences.
Dewhirst FE; Klein EA; Bennett ML; Croft JM; Harris SJ; Marshall-Jones ZV
Vet Microbiol; 2015 Feb; 175(2-4):294-303. PubMed ID: 25523504
[TBL] [Abstract][Full Text] [Related]
34. Comparing K-mer based methods for improved classification of 16S sequences.
Vinje H; Liland KH; Almøy T; Snipen L
BMC Bioinformatics; 2015 Jul; 16():205. PubMed ID: 26130333
[TBL] [Abstract][Full Text] [Related]
35. Accurate taxonomic assignment of short pyrosequencing reads.
Clemente JC; Jansson J; Valiente G
Pac Symp Biocomput; 2010; ():3-9. PubMed ID: 19908352
[TBL] [Abstract][Full Text] [Related]
36. Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.
Kim M; Morrison M; Yu Z
J Microbiol Methods; 2011 Jan; 84(1):81-7. PubMed ID: 21047533
[TBL] [Abstract][Full Text] [Related]
37. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products.
Meola M; Rifa E; Shani N; Delbès C; Berthoud H; Chassard C
BMC Genomics; 2019 Jul; 20(1):560. PubMed ID: 31286860
[TBL] [Abstract][Full Text] [Related]
38. Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences.
Soergel DA; Dey N; Knight R; Brenner SE
ISME J; 2012 Jul; 6(7):1440-4. PubMed ID: 22237546
[TBL] [Abstract][Full Text] [Related]
39. The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology.
Jeong J; Yun K; Mun S; Chung WH; Choi SY; Nam YD; Lim MY; Hong CP; Park C; Ahn YJ; Han K
Sci Rep; 2021 Jan; 11(1):1727. PubMed ID: 33462291
[TBL] [Abstract][Full Text] [Related]
40. Full-Length 16S rRNA Gene Analysis Using Long-Read Nanopore Sequencing for Rapid Identification of Bacteria from Clinical Specimens.
Matsuo Y
Methods Mol Biol; 2023; 2632():193-213. PubMed ID: 36781730
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
