174 related articles for article (PubMed ID: 18772866)
1. Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Laederach A; Das R; Vicens Q; Pearlman SM; Brenowitz M; Herschlag D; Altman RB
Nat Protoc; 2008; 3(9):1395-401. PubMed ID: 18772866
[TBL] [Abstract][Full Text] [Related]
2. SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments.
Das R; Laederach A; Pearlman SM; Herschlag D; Altman RB
RNA; 2005 Mar; 11(3):344-54. PubMed ID: 15701734
[TBL] [Abstract][Full Text] [Related]
3. Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.
Simmons K; Martin JS; Shcherbakova I; Laederach A
Methods Enzymol; 2009; 468():47-66. PubMed ID: 20946764
[TBL] [Abstract][Full Text] [Related]
4. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Mitra S; Shcherbakova IV; Altman RB; Brenowitz M; Laederach A
Nucleic Acids Res; 2008 Jun; 36(11):e63. PubMed ID: 18477638
[TBL] [Abstract][Full Text] [Related]
5. Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions.
Takamoto K; Chance MR; Brenowitz M
Nucleic Acids Res; 2004 Aug; 32(15):E119. PubMed ID: 15319447
[TBL] [Abstract][Full Text] [Related]
6. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.
Shaytan AK; Xiao H; Armeev GA; Gaykalova DA; Komarova GA; Wu C; Studitsky VM; Landsman D; Panchenko AR
Nat Protoc; 2018 Nov; 13(11):2535-2556. PubMed ID: 30341436
[TBL] [Abstract][Full Text] [Related]
7. System for accurate one-dimensional gel analysis including high-resolution quantitative footprinting.
Smith J; Singh M
Biotechniques; 1996 Jun; 20(6):1082-7. PubMed ID: 8780878
[TBL] [Abstract][Full Text] [Related]
8. Footprinting protein-DNA complexes using the hydroxyl radical.
Jain SS; Tullius TD
Nat Protoc; 2008; 3(6):1092-1100. PubMed ID: 18546600
[TBL] [Abstract][Full Text] [Related]
9. Automatic DNA Diagnosis for 1D Gel Electrophoresis Images using Bio-image Processing Technique.
Intarapanich A; Kaewkamnerd S; Shaw PJ; Ukosakit K; Tragoonrung S; Tongsima S
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S15. PubMed ID: 26681167
[TBL] [Abstract][Full Text] [Related]
10. Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".
Brenowitz M; Chance MR; Dhavan G; Takamoto K
Curr Opin Struct Biol; 2002 Oct; 12(5):648-53. PubMed ID: 12464318
[TBL] [Abstract][Full Text] [Related]
11. The Beamline X28C of the Center for Synchrotron Biosciences: a national resource for biomolecular structure and dynamics experiments using synchrotron footprinting.
Gupta S; Sullivan M; Toomey J; Kiselar J; Chance MR
J Synchrotron Radiat; 2007 May; 14(Pt 3):233-43. PubMed ID: 17435298
[TBL] [Abstract][Full Text] [Related]
12. Time-resolved hydroxyl-radical footprinting of RNA using Fe(II)-EDTA.
Hampel KJ; Burke JM
Methods; 2001 Mar; 23(3):233-9. PubMed ID: 11243836
[TBL] [Abstract][Full Text] [Related]
13. Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting.
Shcherbakova I; Brenowitz M
Nat Protoc; 2008; 3(2):288-302. PubMed ID: 18274531
[TBL] [Abstract][Full Text] [Related]
14. Nucleic acid fragmentation on the millisecond timescale using a conventional X-ray rotating anode source: application to protein-DNA footprinting.
Henn A; Halfon J; Kela I; Orion I; Sagi I
Nucleic Acids Res; 2001 Dec; 29(24):E122. PubMed ID: 11812859
[TBL] [Abstract][Full Text] [Related]
15. Visualising DNA: footprinting and 1-2D gels.
Urbach AR; Waring MJ
Mol Biosyst; 2005 Oct; 1(4):287-93. PubMed ID: 16880993
[TBL] [Abstract][Full Text] [Related]
16. In vivo footprinting of the interaction of proteins with DNA and RNA.
Grange T; Bertrand E; Espinás ML; Fromont-Racine M; Rigaud G; Roux J; Pictet R
Methods; 1997 Feb; 11(2):151-63. PubMed ID: 8993027
[TBL] [Abstract][Full Text] [Related]
17. Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase.
Tsodikov OV; Craig ML; Saecker RM; Record MT
J Mol Biol; 1998 Nov; 283(4):757-69. PubMed ID: 9790838
[TBL] [Abstract][Full Text] [Related]
18. Quantitative comparison and evaluation of two commercially available, two-dimensional electrophoresis image analysis software packages, Z3 and Melanie.
Raman B; Cheung A; Marten MR
Electrophoresis; 2002 Jul; 23(14):2194-202. PubMed ID: 12210223
[TBL] [Abstract][Full Text] [Related]
19. Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.
Shaytan AK; Xiao H; Armeev GA; Wu C; Landsman D; Panchenko AR
Nucleic Acids Res; 2017 Sep; 45(16):9229-9243. PubMed ID: 28934480
[TBL] [Abstract][Full Text] [Related]
20. A method to accurately quantitate intensities of (32)P-DNA bands when multiple bands appear in a single lane of a gel is used to study dNTP insertion opposite a benzo[a]pyrene-dG adduct by Sulfolobus DNA polymerases Dpo4 and Dbh.
Sholder G; Loechler EL
DNA Repair (Amst); 2015 Jan; 25():97-103. PubMed ID: 25497330
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
