154 related articles for article (PubMed ID: 18796152)
1. A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.
Hanriot L; Keime C; Gay N; Faure C; Dossat C; Wincker P; Scoté-Blachon C; Peyron C; Gandrillon O
BMC Genomics; 2008 Sep; 9():418. PubMed ID: 18796152
[TBL] [Abstract][Full Text] [Related]
2. Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS.
Hene L; Sreenu VB; Vuong MT; Abidi SH; Sutton JK; Rowland-Jones SL; Davis SJ; Evans EJ
BMC Genomics; 2007 Sep; 8():333. PubMed ID: 17892551
[TBL] [Abstract][Full Text] [Related]
3. A comparative analysis of the information content in long and short SAGE libraries.
Li YJ; Xu P; Qin X; Schmechel DE; Hulette CM; Haines JL; Pericak-Vance MA; Gilbert JR
BMC Bioinformatics; 2006 Nov; 7():504. PubMed ID: 17109755
[TBL] [Abstract][Full Text] [Related]
4. Next-generation tag sequencing for cancer gene expression profiling.
Morrissy AS; Morin RD; Delaney A; Zeng T; McDonald H; Jones S; Zhao Y; Hirst M; Marra MA
Genome Res; 2009 Oct; 19(10):1825-35. PubMed ID: 19541910
[TBL] [Abstract][Full Text] [Related]
5. Digital gene expression by tag sequencing on the illumina genome analyzer.
Morrissy S; Zhao Y; Delaney A; Asano J; Dhalla N; Li I; McDonald H; Pandoh P; Prabhu AL; Tam A; Hirst M; Marra M
Curr Protoc Hum Genet; 2010 Apr; Chapter 11():Unit 11.11.1-36. PubMed ID: 20373513
[TBL] [Abstract][Full Text] [Related]
6. LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse.
Wahl MB; Heinzmann U; Imai K
Bioinformatics; 2005 Apr; 21(8):1393-400. PubMed ID: 15591356
[TBL] [Abstract][Full Text] [Related]
7. Robust-LongSAGE (RL-SAGE): an improved LongSAGE method for high-throughput transcriptome analysis.
Gowda M; Wang GL
Methods Mol Biol; 2008; 387():25-38. PubMed ID: 18287620
[TBL] [Abstract][Full Text] [Related]
8. Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures.
Iandolino A; Nobuta K; da Silva FG; Cook DR; Meyers BC
BMC Plant Biol; 2008 May; 8():53. PubMed ID: 18474095
[TBL] [Abstract][Full Text] [Related]
9. Statistical modeling of sequencing errors in SAGE libraries.
Beissbarth T; Hyde L; Smyth GK; Job C; Boon WM; Tan SS; Scott HS; Speed TP
Bioinformatics; 2004 Aug; 20 Suppl 1():i31-9. PubMed ID: 15262778
[TBL] [Abstract][Full Text] [Related]
10. Validation of oligoarrays for quantitative exploration of the transcriptome.
Nygaard V; Liu F; Holden M; Kuo WP; Trimarchi J; Ohno-Machado L; Cepko CL; Frigessi A; Glad IK; Wiel MA; Hovig E; Lyng H
BMC Genomics; 2008 May; 9():258. PubMed ID: 18513391
[TBL] [Abstract][Full Text] [Related]
11. Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis.
Gowda M; Jantasuriyarat C; Dean RA; Wang GL
Plant Physiol; 2004 Mar; 134(3):890-7. PubMed ID: 15020752
[TBL] [Abstract][Full Text] [Related]
12. Methods for analysis of gene expression in plants using MPSS.
Nobuta K; Vemaraju K; Meyers BC
Methods Mol Biol; 2007; 406():387-408. PubMed ID: 18287704
[TBL] [Abstract][Full Text] [Related]
13. Sequence biases in large scale gene expression profiling data.
Siddiqui AS; Delaney AD; Schnerch A; Griffith OL; Jones SJ; Marra MA
Nucleic Acids Res; 2006 Jul; 34(12):e83. PubMed ID: 16840527
[TBL] [Abstract][Full Text] [Related]
14. Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags.
Silva AP; Chen J; Carraro DM; Wang SM; Camargo AA
Nucleic Acids Res; 2004 Jul; 32(12):e94. PubMed ID: 15247327
[TBL] [Abstract][Full Text] [Related]
15. A spatial dissection of the Arabidopsis floral transcriptome by MPSS.
Peiffer JA; Kaushik S; Sakai H; Arteaga-Vazquez M; Sanchez-Leon N; Ghazal H; Vielle-Calzada JP; Meyers BC
BMC Plant Biol; 2008 Apr; 8():43. PubMed ID: 18426585
[TBL] [Abstract][Full Text] [Related]
16. Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing.
Erdner DL; Anderson DM
BMC Genomics; 2006 Apr; 7():88. PubMed ID: 16638123
[TBL] [Abstract][Full Text] [Related]
17. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods.
Gowda M; Venu RC; Raghupathy MB; Nobuta K; Li H; Wing R; Stahlberg E; Couglan S; Haudenschild CD; Dean R; Nahm BH; Meyers BC; Wang GL
BMC Genomics; 2006 Dec; 7():310. PubMed ID: 17156450
[TBL] [Abstract][Full Text] [Related]
18. The impact of SNPs on the interpretation of SAGE and MPSS experimental data.
Silva AP; De Souza JE; Galante PA; Riggins GJ; De Souza SJ; Camargo AA
Nucleic Acids Res; 2004; 32(20):6104-10. PubMed ID: 15562001
[TBL] [Abstract][Full Text] [Related]
19. aRNA-longSAGE: a new approach to generate SAGE libraries from microdissected cells.
Heidenblut AM; Lüttges J; Buchholz M; Heinitz C; Emmersen J; Nielsen KL; Schreiter P; Souquet M; Nowacki S; Herbrand U; Klöppel G; Schmiegel W; Gress T; Hahn SA
Nucleic Acids Res; 2004 Sep; 32(16):e131. PubMed ID: 15371555
[TBL] [Abstract][Full Text] [Related]
20. MPSS profiling of embryonic gonad and primordial germ cells in chicken.
Kim H; Park TS; Lee WK; Moon S; Kim JN; Shin JH; Jung JG; Lee SD; Park SH; Park KJ; Kim MA; Shin SS; Kim TM; Nam J; Kang Y; Lim JM; Han JY
Physiol Genomics; 2007 May; 29(3):253-9. PubMed ID: 17264242
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]