These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. FunNet: an integrative tool for exploring transcriptional interactions. Prifti E; Zucker JD; Clement K; Henegar C Bioinformatics; 2008 Nov; 24(22):2636-8. PubMed ID: 18799481 [TBL] [Abstract][Full Text] [Related]
5. Biological network mapping and source signal deduction. Brynildsen MP; Wu TY; Jang SS; Liao JC Bioinformatics; 2007 Jul; 23(14):1783-91. PubMed ID: 17495996 [TBL] [Abstract][Full Text] [Related]
6. Bayesian learning of biological pathways on genomic data assimilation. Yoshida R; Nagasaki M; Yamaguchi R; Imoto S; Miyano S; Higuchi T Bioinformatics; 2008 Nov; 24(22):2592-601. PubMed ID: 18818216 [TBL] [Abstract][Full Text] [Related]
7. A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Ghaffari N; Ivanov I; Qian X; Dougherty ER Bioinformatics; 2010 Jun; 26(12):1556-63. PubMed ID: 20421196 [TBL] [Abstract][Full Text] [Related]
8. Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks. Luo W; Woolf PJ Methods Mol Biol; 2010; 674():401-18. PubMed ID: 20827604 [TBL] [Abstract][Full Text] [Related]
9. Genetdes: automatic design of transcriptional networks. Rodrigo G; Carrera J; Jaramillo A Bioinformatics; 2007 Jul; 23(14):1857-8. PubMed ID: 17485427 [TBL] [Abstract][Full Text] [Related]
10. A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Yan X; Mehan MR; Huang Y; Waterman MS; Yu PS; Zhou XJ Bioinformatics; 2007 Jul; 23(13):i577-86. PubMed ID: 17646346 [TBL] [Abstract][Full Text] [Related]
11. Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Raue A; Kreutz C; Maiwald T; Bachmann J; Schilling M; Klingmüller U; Timmer J Bioinformatics; 2009 Aug; 25(15):1923-9. PubMed ID: 19505944 [TBL] [Abstract][Full Text] [Related]
12. A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae. Chen KC; Wang TY; Tseng HH; Huang CY; Kao CY Bioinformatics; 2005 Jun; 21(12):2883-90. PubMed ID: 15802287 [TBL] [Abstract][Full Text] [Related]
13. Module networks revisited: computational assessment and prioritization of model predictions. Joshi A; De Smet R; Marchal K; Van de Peer Y; Michoel T Bioinformatics; 2009 Feb; 25(4):490-6. PubMed ID: 19136553 [TBL] [Abstract][Full Text] [Related]
15. Thermodynamic models of combinatorial gene regulation by distant enhancers. Narula J; Igoshin OA IET Syst Biol; 2010 Nov; 4(6):393-408. PubMed ID: 21073238 [TBL] [Abstract][Full Text] [Related]
16. Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models. Hirose O; Yoshida R; Imoto S; Yamaguchi R; Higuchi T; Charnock-Jones DS; Print C; Miyano S Bioinformatics; 2008 Apr; 24(7):932-42. PubMed ID: 18292116 [TBL] [Abstract][Full Text] [Related]
17. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Batt G; Ropers D; de Jong H; Geiselmann J; Mateescu R; Page M; Schneider D Bioinformatics; 2005 Jun; 21 Suppl 1():i19-28. PubMed ID: 15961457 [TBL] [Abstract][Full Text] [Related]