BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

232 related articles for article (PubMed ID: 18798655)

  • 1. A role for water molecules in DNA-ligand minor groove recognition.
    Nguyen B; Neidle S; Wilson WD
    Acc Chem Res; 2009 Jan; 42(1):11-21. PubMed ID: 18798655
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove.
    Wang L; Kumar A; Boykin DW; Bailly C; Wilson WD
    J Mol Biol; 2002 Mar; 317(3):361-74. PubMed ID: 11922670
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predictive binding geometry of ligands to DNA minor groove: isohelicity and hydrogen-bonding pattern.
    Stockert JC
    Methods Mol Biol; 2014; 1094():1-12. PubMed ID: 24162975
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hydrogen-bonding patterns of minor groove-binder-DNA complexes reveal criteria for discovery of new scaffolds.
    Spitzer GM; Wellenzohn B; Markt P; Kirchmair J; Langer T; Liedl KR
    J Chem Inf Model; 2009 Apr; 49(4):1063-9. PubMed ID: 19275189
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Water-mediated binding of agents that target the DNA minor groove.
    Liu Y; Kumar A; Depauw S; Nhili R; David-Cordonnier MH; Lee MP; Ismail MA; Farahat AA; Say M; Chackal-Catoen S; Batista-Parra A; Neidle S; Boykin DW; Wilson WD
    J Am Chem Soc; 2011 Jul; 133(26):10171-83. PubMed ID: 21627167
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Design of DNA minor groove binding diamidines that recognize GC base pair sequences: a dimeric-hinge interaction motif.
    Munde M; Ismail MA; Arafa R; Peixoto P; Collar CJ; Liu Y; Hu L; David-Cordonnier MH; Lansiaux A; Bailly C; Boykin DW; Wilson WD
    J Am Chem Soc; 2007 Nov; 129(44):13732-43. PubMed ID: 17935330
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AT selectivity and DNA minor groove binding: modelling, NMR and structural studies of the interactions of propamidine and pentamidine with d(CGCGAATTCGCG)2.
    Jenkins TC; Lane AN
    Biochim Biophys Acta; 1997 Feb; 1350(2):189-204. PubMed ID: 9048889
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
    Wei D; Wilson WD; Neidle S
    J Am Chem Soc; 2013 Jan; 135(4):1369-77. PubMed ID: 23276263
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structure of a bis-amidinium derivative of hoechst 33258 complexed to dodecanucleotide d(CGCGAATTCGCG)2: the role of hydrogen bonding in minor groove drug-DNA recognition.
    Clark GR; Boykin DW; Czarny A; Neidle S
    Nucleic Acids Res; 1997 Apr; 25(8):1510-5. PubMed ID: 9162901
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Solution structure of the calicheamicin gamma 1I-DNA complex.
    Kumar RA; Ikemoto N; Patel DJ
    J Mol Biol; 1997 Jan; 265(2):187-201. PubMed ID: 9020982
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM; Sunnerhagen M; Otting G; van Gunsteren WF
    J Mol Biol; 1998 Oct; 282(4):859-73. PubMed ID: 9743632
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DNA minor groove recognition by bis-benzimidazole analogues of Hoechst 33258: insights into structure-DNA affinity relationships assessed by fluorescence titration measurements.
    Bostock-Smith CE; Searle MS
    Nucleic Acids Res; 1999 Apr; 27(7):1619-24. PubMed ID: 10075992
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Binding to the DNA minor groove by heterocyclic dications: from AT-specific monomers to GC recognition with dimers.
    Nanjunda R; Wilson WD
    Curr Protoc Nucleic Acid Chem; 2012 Dec; Chapter 8():Unit8.8. PubMed ID: 23255206
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A thermodynamic and structural analysis of DNA minor-groove complex formation.
    Mazur S; Tanious FA; Ding D; Kumar A; Boykin DW; Simpson IJ; Neidle S; Wilson WD
    J Mol Biol; 2000 Jul; 300(2):321-37. PubMed ID: 10873468
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations and binding free energy analysis of DNA minor groove complexes of curcumin.
    Koonammackal MV; Nellipparambil UV; Sudarsanakumar C
    J Mol Model; 2011 Nov; 17(11):2805-16. PubMed ID: 21287216
    [TBL] [Abstract][Full Text] [Related]  

  • 16. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
    Chiu TK; Dickerson RE
    J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural analysis of the binding modes of minor groove ligands comprised of disubstituted benzenes.
    Hawkins CA; Watson C; Yan Y; Gong B; Wemmer DE
    Nucleic Acids Res; 2001 Feb; 29(4):936-42. PubMed ID: 11160926
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Importance of minor groove functional groups for the stability of DNA duplexes.
    Sun Z; Chen D; Lan T; McLaughlin LW
    Biopolymers; 2002 Nov; 65(3):211-7. PubMed ID: 12228926
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove.
    Athri P; Wilson WD
    J Am Chem Soc; 2009 Jun; 131(22):7618-25. PubMed ID: 19445463
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular modelling of ligand-DNA minor groove binding: role of ligand-water interactions.
    Mikheikin AL; Zhuze AL; Zasedatelev AS
    J Biomol Struct Dyn; 2001 Aug; 19(1):175-8. PubMed ID: 11565848
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.