91 related articles for article (PubMed ID: 18799481)
1. FunNet: an integrative tool for exploring transcriptional interactions.
Prifti E; Zucker JD; Clement K; Henegar C
Bioinformatics; 2008 Nov; 24(22):2636-8. PubMed ID: 18799481
[TBL] [Abstract][Full Text] [Related]
2. Interactional and functional centrality in transcriptional co-expression networks.
Prifti E; Zucker JD; Clément K; Henegar C
Bioinformatics; 2010 Dec; 26(24):3083-9. PubMed ID: 20959383
[TBL] [Abstract][Full Text] [Related]
3. MOVE: a multi-level ontology-based visualization and exploration framework for genomic networks.
Bosman DW; Blom EJ; Ogao PJ; Kuipers OP; Roerdink JB
In Silico Biol; 2007; 7(1):35-59. PubMed ID: 17688427
[TBL] [Abstract][Full Text] [Related]
4. CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.
Baumbach J; Wittkop T; Rademacher K; Rahmann S; Brinkrolf K; Tauch A
J Biotechnol; 2007 Apr; 129(2):279-89. PubMed ID: 17229482
[TBL] [Abstract][Full Text] [Related]
5. Using cisTargetX to predict transcriptional targets and networks in Drosophila.
Potier D; Atak ZK; Sanchez MN; Herrmann C; Aerts S
Methods Mol Biol; 2012; 786():291-314. PubMed ID: 21938634
[TBL] [Abstract][Full Text] [Related]
6. AspAlt: A tool for inter-database, inter-genomic and user-specific comparative analysis of alternative transcription and alternative splicing in 46 eukaryotes.
Bhasi A; Philip P; Sreedharan VT; Senapathy P
Genomics; 2009 Jul; 94(1):48-54. PubMed ID: 19285128
[TBL] [Abstract][Full Text] [Related]
7. Genetdes: automatic design of transcriptional networks.
Rodrigo G; Carrera J; Jaramillo A
Bioinformatics; 2007 Jul; 23(14):1857-8. PubMed ID: 17485427
[TBL] [Abstract][Full Text] [Related]
8. Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.
Zhong S; Xie D
Artif Intell Med; 2007 Oct; 41(2):105-15. PubMed ID: 17913480
[TBL] [Abstract][Full Text] [Related]
9. Directed module detection in a large-scale expression compendium.
Fu Q; Lemmens K; Sanchez-Rodriguez A; Thijs IM; Meysman P; Sun H; Fierro AC; Engelen K; Marchal K
Methods Mol Biol; 2012; 804():131-65. PubMed ID: 22144152
[TBL] [Abstract][Full Text] [Related]
10. Gene networks as a tool to understand transcriptional regulation.
Veiga DF; Vicente FF; Bastos G
Genet Mol Res; 2006 Mar; 5(1):254-68. PubMed ID: 16755516
[TBL] [Abstract][Full Text] [Related]
11. Bridge and brick network motifs: identifying significant building blocks from complex biological systems.
Huang CY; Cheng CY; Sun CT
Artif Intell Med; 2007 Oct; 41(2):117-27. PubMed ID: 17825540
[TBL] [Abstract][Full Text] [Related]
12. MILANO--custom annotation of microarray results using automatic literature searches.
Rubinstein R; Simon I
BMC Bioinformatics; 2005 Jan; 6():12. PubMed ID: 15661078
[TBL] [Abstract][Full Text] [Related]
13. ReTRN: a retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm.
Li Y; Zhu Y; Bai X; Cai H; Ji W; Guo D
Genomics; 2009 Nov; 94(5):349-54. PubMed ID: 19712740
[TBL] [Abstract][Full Text] [Related]
14. Bifurcation discovery tool.
Chickarmane V; Paladugu SR; Bergmann F; Sauro HM
Bioinformatics; 2005 Sep; 21(18):3688-90. PubMed ID: 16081475
[TBL] [Abstract][Full Text] [Related]
15. tCal: transcriptional probability calculator using thermodynamic model.
Zhou X; Su Z
Bioinformatics; 2008 Nov; 24(22):2639-40. PubMed ID: 18796477
[TBL] [Abstract][Full Text] [Related]
16. Gene expression complex networks: synthesis, identification, and analysis.
Lopes FM; Cesar RM; Costa Lda F
J Comput Biol; 2011 Oct; 18(10):1353-67. PubMed ID: 21548810
[TBL] [Abstract][Full Text] [Related]
17. Logical modelling of regulatory networks with GINsim 2.3.
Naldi A; Berenguier D; Fauré A; Lopez F; Thieffry D; Chaouiya C
Biosystems; 2009 Aug; 97(2):134-9. PubMed ID: 19426782
[TBL] [Abstract][Full Text] [Related]
18. CARGO: a web portal to integrate customized biological information.
Cases I; Pisano DG; Andres E; Carro A; Fernández JM; Gómez-López G; Rodriguez JM; Vera JF; Valencia A; Rojas AM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W16-20. PubMed ID: 17483515
[TBL] [Abstract][Full Text] [Related]
19. Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium.
Moskvin OV; Bolotin D; Wang A; Ivanov PS; Gomelsky M
Biosystems; 2011 Feb; 103(2):125-31. PubMed ID: 21070832
[TBL] [Abstract][Full Text] [Related]
20. The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes.
Tacutu R; Budovsky A; Fraifeld VE
Biogerontology; 2010 Aug; 11(4):513-22. PubMed ID: 20186480
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
