BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 18801164)

  • 1. WebScipio: an online tool for the determination of gene structures using protein sequences.
    Odronitz F; Pillmann H; Keller O; Waack S; Kollmar M
    BMC Genomics; 2008 Sep; 9():422. PubMed ID: 18801164
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
    Panitz F; Stengaard H; Hornshøj H; Gorodkin J; Hedegaard J; Cirera S; Thomsen B; Madsen LB; Høj A; Vingborg RK; Zahn B; Wang X; Wang X; Wernersson R; Jørgensen CB; Scheibye-Knudsen K; Arvin T; Lumholdt S; Sawera M; Green T; Nielsen BJ; Havgaard JH; Brunak S; Fredholm M; Bendixen C
    Bioinformatics; 2007 Jul; 23(13):i387-91. PubMed ID: 17646321
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Direct mapping and alignment of protein sequences onto genomic sequence.
    Gotoh O
    Bioinformatics; 2008 Nov; 24(21):2438-44. PubMed ID: 18728043
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Tracembler--software for in-silico chromosome walking in unassembled genomes.
    Dong Q; Wilkerson MD; Brendel V
    BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The MicrobesOnline Web site for comparative genomics.
    Alm EJ; Huang KH; Price MN; Koche RP; Keller K; Dubchak IL; Arkin AP
    Genome Res; 2005 Jul; 15(7):1015-22. PubMed ID: 15998914
    [TBL] [Abstract][Full Text] [Related]  

  • 6. POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis.
    Lin CY; Lin FK; Lin CH; Lai LW; Hsu HJ; Chen SH; Hsiung CA
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W553-6. PubMed ID: 15980533
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
    Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
    Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MANTIS: a phylogenetic framework for multi-species genome comparisons.
    Tzika AC; Helaers R; Van de Peer Y; Milinkovitch MC
    Bioinformatics; 2008 Jan; 24(2):151-7. PubMed ID: 18025004
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.
    Hatje K; Keller O; Hammesfahr B; Pillmann H; Waack S; Kollmar M
    BMC Res Notes; 2011 Jul; 4():265. PubMed ID: 21798037
    [TBL] [Abstract][Full Text] [Related]  

  • 10. GenomeBlast: a web tool for small genome comparison.
    Lu G; Jiang L; Helikar RM; Rowley TW; Zhang L; Chen X; Moriyama EN
    BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S18. PubMed ID: 17217510
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.
    Moretti S; Reinier F; Poirot O; Armougom F; Audic S; Keduas V; Notredame C
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W600-3. PubMed ID: 16845080
    [TBL] [Abstract][Full Text] [Related]  

  • 13. YASS: enhancing the sensitivity of DNA similarity search.
    Noé L; Kucherov G
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
    Seibel PN; Müller T; Dandekar T; Schultz J; Wolf M
    BMC Bioinformatics; 2006 Nov; 7():498. PubMed ID: 17101042
    [TBL] [Abstract][Full Text] [Related]  

  • 15. WebScipio: Reconstructing alternative splice variants of eukaryotic proteins.
    Hatje K; Hammesfahr B; Kollmar M
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W504-9. PubMed ID: 23677611
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Taxonomic colouring of phylogenetic trees of protein sequences.
    Palidwor G; Reynaud EG; Andrade-Navarro MA
    BMC Bioinformatics; 2006 Feb; 7():79. PubMed ID: 16503967
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
    Lassmann T; Sonnhammer EL
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W596-9. PubMed ID: 16845078
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PartiGeneDB--collating partial genomes.
    Peregrín-Alvarez JM; Yam A; Sivakumar G; Parkinson J
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D303-7. PubMed ID: 15608203
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Predicting Genes in Closely Related Species with Scipio and WebScipio.
    Kollmar M
    Methods Mol Biol; 2019; 1962():193-206. PubMed ID: 31020561
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MeDor: a metaserver for predicting protein disorder.
    Lieutaud P; Canard B; Longhi S
    BMC Genomics; 2008 Sep; 9 Suppl 2(Suppl 2):S25. PubMed ID: 18831791
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.