220 related articles for article (PubMed ID: 18842120)
1. Preferred and avoided codon pairs in three domains of life.
Tats A; Tenson T; Remm M
BMC Genomics; 2008 Oct; 9():463. PubMed ID: 18842120
[TBL] [Abstract][Full Text] [Related]
2. The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences.
Antezana MA; Kreitman M
J Mol Evol; 1999 Jul; 49(1):36-43. PubMed ID: 10368432
[TBL] [Abstract][Full Text] [Related]
3. A computational screen for alternative genetic codes in over 250,000 genomes.
Shulgina Y; Eddy SR
Elife; 2021 Nov; 10():. PubMed ID: 34751130
[TBL] [Abstract][Full Text] [Related]
4. Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation.
López JL; Lozano MJ; Fabre ML; Lagares A
mBio; 2020 Jul; 11(4):. PubMed ID: 32694138
[TBL] [Abstract][Full Text] [Related]
5. Non-random arrangement of synonymous codons in archaea coding sequences.
Zhang YM; Shao ZQ; Yang LT; Sun XQ; Mao YF; Chen JQ; Wang B
Genomics; 2013 Jun; 101(6):362-7. PubMed ID: 23603537
[TBL] [Abstract][Full Text] [Related]
6. Avoidance of long mononucleotide repeats in codon pair usage.
Gu T; Tan S; Gou X; Araki H; Tian D
Genetics; 2010 Nov; 186(3):1077-84. PubMed ID: 20805553
[TBL] [Abstract][Full Text] [Related]
7. Selection shapes the patterns of codon usage in three closely related species of genus Misgurnus.
Yi S; Li Y; Wang W
Genomics; 2018 Mar; 110(2):134-142. PubMed ID: 28911975
[TBL] [Abstract][Full Text] [Related]
8. Codon bias signatures, organization of microorganisms in codon space, and lifestyle.
Carbone A; Képès F; Zinovyev A
Mol Biol Evol; 2005 Mar; 22(3):547-61. PubMed ID: 15537809
[TBL] [Abstract][Full Text] [Related]
9. Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage.
Trotta E
BMC Genomics; 2016 May; 17():366. PubMed ID: 27188984
[TBL] [Abstract][Full Text] [Related]
10. Codon usage in mitochondrial genomes: distinguishing context-dependent mutation from translational selection.
Jia W; Higgs PG
Mol Biol Evol; 2008 Feb; 25(2):339-51. PubMed ID: 18048402
[TBL] [Abstract][Full Text] [Related]
11. Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles.
Botzman M; Margalit H
Genome Biol; 2011 Oct; 12(10):R109. PubMed ID: 22032172
[TBL] [Abstract][Full Text] [Related]
12. The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function.
Supek F
J Mol Evol; 2016 Jan; 82(1):65-73. PubMed ID: 26538122
[TBL] [Abstract][Full Text] [Related]
13. Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data.
Feng C; Xu CJ; Wang Y; Liu WL; Yin XR; Li X; Chen M; Chen KS
BMC Genomics; 2013 Oct; 14():732. PubMed ID: 24160180
[TBL] [Abstract][Full Text] [Related]
14. Species-specific codon context rules unveil non-neutrality effects of synonymous mutations.
Moura GR; Pinheiro M; Freitas A; Oliveira JL; Frommlet JC; Carreto L; Soares AR; Bezerra AR; Santos MA
PLoS One; 2011; 6(10):e26817. PubMed ID: 22046369
[TBL] [Abstract][Full Text] [Related]
15. Nuclear genetic codes with a different meaning of the UAG and the UAA codon.
Pánek T; Žihala D; Sokol M; Derelle R; Klimeš V; Hradilová M; Zadrobílková E; Susko E; Roger AJ; Čepička I; Eliáš M
BMC Biol; 2017 Feb; 15(1):8. PubMed ID: 28193262
[TBL] [Abstract][Full Text] [Related]
16. LUCA as well as the ancestors of archaea, bacteria and eukaryotes were progenotes: Inference from the distribution and diversity of the reading mechanism of the AUA and AUG codons in the domains of life.
Di Giulio M
Biosystems; 2020 Dec; 198():104239. PubMed ID: 32919036
[TBL] [Abstract][Full Text] [Related]
17. tRNA properties help shape codon pair preferences in open reading frames.
Buchan JR; Aucott LS; Stansfield I
Nucleic Acids Res; 2006; 34(3):1015-27. PubMed ID: 16473853
[TBL] [Abstract][Full Text] [Related]
18. Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.
Wald N; Alroy M; Botzman M; Margalit H
Nucleic Acids Res; 2012 Aug; 40(15):7074-83. PubMed ID: 22581775
[TBL] [Abstract][Full Text] [Related]
19. Universal pattern and diverse strengths of successive synonymous codon bias in three domains of life, particularly among prokaryotic genomes.
Guo FB; Ye YN; Zhao HL; Lin D; Wei W
DNA Res; 2012 Dec; 19(6):477-85. PubMed ID: 23132389
[TBL] [Abstract][Full Text] [Related]
20. Bias at the third nucleotide of codon pairs in virus and host genomes.
Plant EP; Ye Z
Sci Rep; 2022 Mar; 12(1):4522. PubMed ID: 35296743
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]