101 related articles for article (PubMed ID: 18842602)
1. A novel method for comparing topological models of protein structures enhanced with ligand information.
Veeramalai M; Gilbert D
Bioinformatics; 2008 Dec; 24(23):2698-705. PubMed ID: 18842602
[TBL] [Abstract][Full Text] [Related]
2. An optimized TOPS+ comparison method for enhanced TOPS models.
Veeramalai M; Gilbert D; Valiente G
BMC Bioinformatics; 2010 Mar; 11():138. PubMed ID: 20236520
[TBL] [Abstract][Full Text] [Related]
3. TOPS: an enhanced database of protein structural topology.
Michalopoulos I; Torrance GM; Gilbert DR; Westhead DR
Nucleic Acids Res; 2004 Jan; 32(Database issue):D251-4. PubMed ID: 14681405
[TBL] [Abstract][Full Text] [Related]
4. Protein structure topological comparison, discovery and matching service.
Torrance GM; Gilbert DR; Michalopoulos I; Westhead DW
Bioinformatics; 2005 May; 21(10):2537-8. PubMed ID: 15741246
[TBL] [Abstract][Full Text] [Related]
5. A new method to analyze the similarity of protein structure using TOPS representations.
Guo Y; Wang TM
J Biomol Struct Dyn; 2008 Dec; 26(3):367-74. PubMed ID: 18808202
[TBL] [Abstract][Full Text] [Related]
6. Identification of local variations within secondary structures of proteins.
Kumar P; Bansal M
Acta Crystallogr D Biol Crystallogr; 2015 May; 71(Pt 5):1077-86. PubMed ID: 25945573
[TBL] [Abstract][Full Text] [Related]
7. Graph comparison by log-odds score matrices with application to protein topology analysis.
Rocha J
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):564-9. PubMed ID: 21233531
[TBL] [Abstract][Full Text] [Related]
8. A new test set for validating predictions of protein-ligand interaction.
Nissink JW; Murray C; Hartshorn M; Verdonk ML; Cole JC; Taylor R
Proteins; 2002 Dec; 49(4):457-71. PubMed ID: 12402356
[TBL] [Abstract][Full Text] [Related]
9. Functional structural motifs for protein-ligand, protein-protein, and protein-nucleic acid interactions and their connection to supersecondary structures.
Kinjo AR; Nakamura H
Methods Mol Biol; 2013; 932():295-315. PubMed ID: 22987360
[TBL] [Abstract][Full Text] [Related]
10. Comparison of TOPS strings based on LZ complexity.
Liu L; Wang T
J Theor Biol; 2008 Mar; 251(1):159-66. PubMed ID: 18166201
[TBL] [Abstract][Full Text] [Related]
11. Angle-distance image matching techniques for protein structure comparison.
Chu CH; Tang CY; Tang CY; Pai TW
J Mol Recognit; 2008; 21(6):442-52. PubMed ID: 18729044
[TBL] [Abstract][Full Text] [Related]
12. Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.
Strömbergsson H; Kryshtafovych A; Prusis P; Fidelis K; Wikberg JE; Komorowski J; Hvidsten TR
Proteins; 2006 Nov; 65(3):568-79. PubMed ID: 16948162
[TBL] [Abstract][Full Text] [Related]
13. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model.
Veeramalai M; Ye Y; Godzik A
BMC Bioinformatics; 2008 Aug; 9():358. PubMed ID: 18759993
[TBL] [Abstract][Full Text] [Related]
14. Crystal packing effects on protein loops.
Rapp CS; Pollack RM
Proteins; 2005 Jul; 60(1):103-9. PubMed ID: 15852307
[TBL] [Abstract][Full Text] [Related]
15. Using an alignment of fragment strings for comparing protein structures.
Friedberg I; Harder T; Kolodny R; Sitbon E; Li Z; Godzik A
Bioinformatics; 2007 Jan; 23(2):e219-24. PubMed ID: 17237095
[TBL] [Abstract][Full Text] [Related]
16. Motif-based searching in TOPS protein topology databases.
Gilbert D; Westhead D; Nagano N; Thornton J
Bioinformatics; 1999 Apr; 15(4):317-26. PubMed ID: 10320400
[TBL] [Abstract][Full Text] [Related]
17. Classification of ligand molecules in PDB with fast heuristic graph match algorithm COMPLIG.
Saito M; Takemura N; Shirai T
J Mol Biol; 2012 Dec; 424(5):379-90. PubMed ID: 23041414
[TBL] [Abstract][Full Text] [Related]
18. Prediction of buried helices in multispan alpha helical membrane proteins.
Adamian L; Liang J
Proteins; 2006 Apr; 63(1):1-5. PubMed ID: 16419070
[TBL] [Abstract][Full Text] [Related]
19. Enhanced protein fold recognition using a structural alphabet.
Deschavanne P; Tufféry P
Proteins; 2009 Jul; 76(1):129-37. PubMed ID: 19089985
[TBL] [Abstract][Full Text] [Related]
20. A new protein folding algorithm based on hydrophobic compactness: Rigid Unconnected Secondary Structure Iterative Assembly (RUSSIA). I: Methodology.
Znamenskiy D; Chomilier J; Le Tuan K; Mornon JP
Protein Eng; 2003 Dec; 16(12):925-35. PubMed ID: 14983072
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
