BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 18930732)

  • 1. Correlated evolution of interacting proteins: looking behind the mirrortree.
    Kann MG; Shoemaker BA; Panchenko AR; Przytycka TM
    J Mol Biol; 2009 Jan; 385(1):91-8. PubMed ID: 18930732
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of protein interaction based on similarity of phylogenetic trees.
    Pazos F; Juan D; Izarzugaza JM; Leon E; Valencia A
    Methods Mol Biol; 2008; 484():523-35. PubMed ID: 18592199
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predicting protein-protein interaction by the mirrortree method: possibilities and limitations.
    Zhou H; Jakobsson E
    PLoS One; 2013; 8(12):e81100. PubMed ID: 24349035
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Predicting protein domain interactions from coevolution of conserved regions.
    Kann MG; Jothi R; Cherukuri PF; Przytycka TM
    Proteins; 2007 Jun; 67(4):811-20. PubMed ID: 17357158
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.
    Jothi R; Cherukuri PF; Tasneem A; Przytycka TM
    J Mol Biol; 2006 Sep; 362(4):861-75. PubMed ID: 16949097
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Hakes L; Lovell SC; Oliver SG; Robertson DL
    Proc Natl Acad Sci U S A; 2007 May; 104(19):7999-8004. PubMed ID: 17468399
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Exploiting the co-evolution of interacting proteins to discover interaction specificity.
    Ramani AK; Marcotte EM
    J Mol Biol; 2003 Mar; 327(1):273-84. PubMed ID: 12614624
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The origins of the evolutionary signal used to predict protein-protein interactions.
    Swapna LS; Srinivasan N; Robertson DL; Lovell SC
    BMC Evol Biol; 2012 Dec; 12():238. PubMed ID: 23217198
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions.
    Ochoa D; García-Gutiérrez P; Juan D; Valencia A; Pazos F
    Mol Biosyst; 2013 Jan; 9(1):70-6. PubMed ID: 23104128
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein co-evolution, co-adaptation and interactions.
    Pazos F; Valencia A
    EMBO J; 2008 Oct; 27(20):2648-55. PubMed ID: 18818697
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Equivalent binding sites reveal convergently evolved interaction motifs.
    Henschel A; Kim WK; Schroeder M
    Bioinformatics; 2006 Mar; 22(5):550-5. PubMed ID: 16287935
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using coevolution to predict protein-protein interactions.
    Clark GW; Dar VU; Bezginov A; Yang JM; Charlebois RL; Tillier ER
    Methods Mol Biol; 2011; 781():237-56. PubMed ID: 21877284
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure-templated predictions of novel protein interactions from sequence information.
    Betel D; Breitkreuz KE; Isserlin R; Dewar-Darch D; Tyers M; Hogue CW
    PLoS Comput Biol; 2007 Sep; 3(9):1783-9. PubMed ID: 17892321
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An integrated view of molecular coevolution in protein-protein interactions.
    Lovell SC; Robertson DL
    Mol Biol Evol; 2010 Nov; 27(11):2567-75. PubMed ID: 20551042
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.
    Gueudré T; Baldassi C; Zamparo M; Weigt M; Pagnani A
    Proc Natl Acad Sci U S A; 2016 Oct; 113(43):12186-12191. PubMed ID: 27729520
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phylogenetic correlations can suffice to infer protein partners from sequences.
    Marmier G; Weigt M; Bitbol AF
    PLoS Comput Biol; 2019 Oct; 15(10):e1007179. PubMed ID: 31609984
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Statistical analysis of domains in interacting protein pairs.
    Nye TM; Berzuini C; Gilks WR; Babu MM; Teichmann SA
    Bioinformatics; 2005 Apr; 21(7):993-1001. PubMed ID: 15509600
    [TBL] [Abstract][Full Text] [Related]  

  • 18. 3D-partner: a web server to infer interacting partners and binding models.
    Chen YC; Lo YS; Hsu WC; Yang JM
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W561-7. PubMed ID: 17517763
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Codep: maximizing co-evolutionary interdependencies to discover interacting proteins.
    Tillier ER; Biro L; Li G; Tillo D
    Proteins; 2006 Jun; 63(4):822-31. PubMed ID: 16634043
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships.
    Espadaler J; Romero-Isart O; Jackson RM; Oliva B
    Bioinformatics; 2005 Aug; 21(16):3360-8. PubMed ID: 15961445
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.