214 related articles for article (PubMed ID: 18948293)
1. Voronoia: analyzing packing in protein structures.
Rother K; Hildebrand PW; Goede A; Gruening B; Preissner R
Nucleic Acids Res; 2009 Jan; 37(Database issue):D393-5. PubMed ID: 18948293
[TBL] [Abstract][Full Text] [Related]
2. JAIL: a structure-based interface library for macromolecules.
Günther S; von Eichborn J; May P; Preissner R
Nucleic Acids Res; 2009 Jan; 37(Database issue):D338-41. PubMed ID: 18832369
[TBL] [Abstract][Full Text] [Related]
3. ProtBuD: a database of biological unit structures of protein families and superfamilies.
Xu Q; Canutescu A; Obradovic Z; Dunbrack RL
Bioinformatics; 2006 Dec; 22(23):2876-82. PubMed ID: 17018535
[TBL] [Abstract][Full Text] [Related]
4. Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly.
Voss NR; Gerstein M
J Mol Biol; 2005 Feb; 346(2):477-92. PubMed ID: 15670598
[TBL] [Abstract][Full Text] [Related]
5. The packing density in proteins: standard radii and volumes.
Tsai J; Taylor R; Chothia C; Gerstein M
J Mol Biol; 1999 Jul; 290(1):253-66. PubMed ID: 10388571
[TBL] [Abstract][Full Text] [Related]
6. Assessing methods for identifying pair-wise atomic contacts across binding interfaces.
Fischer TB; Holmes JB; Miller IR; Parsons JR; Tung L; Hu JC; Tsai J
J Struct Biol; 2006 Feb; 153(2):103-12. PubMed ID: 16377205
[TBL] [Abstract][Full Text] [Related]
7. Voronoia 4-ever.
Staritzbichler R; Ristic N; Goede A; Preissner R; Hildebrand PW
Nucleic Acids Res; 2021 Jul; 49(W1):W685-W690. PubMed ID: 34107038
[TBL] [Abstract][Full Text] [Related]
8. Protein Peeling 2: a web server to convert protein structures into series of protein units.
Gelly JC; Etchebest C; Hazout S; de Brevern AG
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W75-8. PubMed ID: 16845113
[TBL] [Abstract][Full Text] [Related]
9. The FoldX web server: an online force field.
Schymkowitz J; Borg J; Stricher F; Nys R; Rousseau F; Serrano L
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W382-8. PubMed ID: 15980494
[TBL] [Abstract][Full Text] [Related]
10. NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures.
Weichenberger CX; Sippl MJ
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W403-6. PubMed ID: 17478502
[TBL] [Abstract][Full Text] [Related]
11. RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank.
Nederveen AJ; Doreleijers JF; Vranken W; Miller Z; Spronk CA; Nabuurs SB; Güntert P; Livny M; Markley JL; Nilges M; Ulrich EL; Kaptein R; Bonvin AM
Proteins; 2005 Jun; 59(4):662-72. PubMed ID: 15822098
[TBL] [Abstract][Full Text] [Related]
12. The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.
Fukuchi S; Homma K; Sakamoto S; Sugawara H; Tateno Y; Gojobori T; Nishikawa K
Nucleic Acids Res; 2009 Jan; 37(Database issue):D333-7. PubMed ID: 18987007
[TBL] [Abstract][Full Text] [Related]
13. PPIDD: an extraction and visualisation method of biological protein-protein interfaces.
Benoit V; Mucchielli-Giorgi MH; Dumont B; Durosay P; Reymond N; Delacroix H
Biochimie; 2008 Apr; 90(4):640-7. PubMed ID: 18086573
[TBL] [Abstract][Full Text] [Related]
14. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking.
Li AJ; Nussinov R
Proteins; 1998 Jul; 32(1):111-27. PubMed ID: 9672047
[TBL] [Abstract][Full Text] [Related]
15. Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description.
Teyra J; Pisabarro MT
Proteins; 2007 Jun; 67(4):1087-95. PubMed ID: 17397062
[TBL] [Abstract][Full Text] [Related]
16. Development of KiBank, a database supporting structure-based drug design.
Zhang J; Aizawa M; Amari S; Iwasawa Y; Nakano T; Nakata K
Comput Biol Chem; 2004 Dec; 28(5-6):401-7. PubMed ID: 15556481
[TBL] [Abstract][Full Text] [Related]
17. A protein domain interaction interface database: InterPare.
Gong S; Park C; Choi H; Ko J; Jang I; Lee J; Bolser DM; Oh D; Kim DS; Bhak J
BMC Bioinformatics; 2005 Aug; 6():207. PubMed ID: 16122378
[TBL] [Abstract][Full Text] [Related]
18. Voronoi and Voronoi-related tessellations in studies of protein structure and interaction.
Poupon A
Curr Opin Struct Biol; 2004 Apr; 14(2):233-41. PubMed ID: 15093839
[TBL] [Abstract][Full Text] [Related]
19. Electrostatic potential calculation for biomolecules--creating a database of pre-calculated values reported on a per residue basis for all PDB protein structures.
Rocchia W; Neshich G
Genet Mol Res; 2007 Oct; 6(4):923-36. PubMed ID: 18058713
[TBL] [Abstract][Full Text] [Related]
20. Molecular surface generation using a variable-radius solvent probe.
Bhat S; Purisima EO
Proteins; 2006 Jan; 62(1):244-61. PubMed ID: 16287115
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
