292 related articles for article (PubMed ID: 18950538)
1. CompMoby: comparative MobyDick for detection of cis-regulatory motifs.
Chaivorapol C; Melton C; Wei G; Yeh RF; Ramalho-Santos M; Blelloch R; Li H
BMC Bioinformatics; 2008 Oct; 9():455. PubMed ID: 18950538
[TBL] [Abstract][Full Text] [Related]
2. PRECISE: software for prediction of cis-acting regulatory elements.
Trindade LM; van Berloo R; Fiers M; Visser RG
J Hered; 2005; 96(5):618-22. PubMed ID: 16135709
[TBL] [Abstract][Full Text] [Related]
3. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
4. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N; Polychronidou M; Lohmann I
PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
[TBL] [Abstract][Full Text] [Related]
5. CAGER: classification analysis of gene expression regulation using multiple information sources.
Ruan J; Zhang W
BMC Bioinformatics; 2005 May; 6():114. PubMed ID: 15890068
[TBL] [Abstract][Full Text] [Related]
6. WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.
Wang G; Yu T; Zhang W
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W412-6. PubMed ID: 15980501
[TBL] [Abstract][Full Text] [Related]
7. Ab initio identification of putative human transcription factor binding sites by comparative genomics.
Corà D; Herrmann C; Dieterich C; Di Cunto F; Provero P; Caselle M
BMC Bioinformatics; 2005 May; 6():110. PubMed ID: 15865625
[TBL] [Abstract][Full Text] [Related]
8. Bioinformatic identification of novel putative photoreceptor specific cis-elements.
Danko CG; McIlvain VA; Qin M; Knox BE; Pertsov AM
BMC Bioinformatics; 2007 Oct; 8():407. PubMed ID: 17953763
[TBL] [Abstract][Full Text] [Related]
9. Role of conserved cis-regulatory elements in the post-transcriptional regulation of the human MECP2 gene involved in autism.
Bagga JS; D'Antonio LA
Hum Genomics; 2013 Sep; 7(1):19. PubMed ID: 24040966
[TBL] [Abstract][Full Text] [Related]
10. Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
Berendzen KW; Stüber K; Harter K; Wanke D
BMC Bioinformatics; 2006 Nov; 7():522. PubMed ID: 17137509
[TBL] [Abstract][Full Text] [Related]
11. MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs.
Kato M; Tsunoda T
BMC Bioinformatics; 2007 Mar; 8():100. PubMed ID: 17378935
[TBL] [Abstract][Full Text] [Related]
12. Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding.
Mullapudi N; Lancto CA; Abrahamsen MS; Kissinger JC
BMC Genomics; 2007 Jan; 8():13. PubMed ID: 17212834
[TBL] [Abstract][Full Text] [Related]
13. CisMiner: genome-wide in-silico cis-regulatory module prediction by fuzzy itemset mining.
Navarro C; Lopez FJ; Cano C; Garcia-Alcalde F; Blanco A
PLoS One; 2014; 9(9):e108065. PubMed ID: 25268582
[TBL] [Abstract][Full Text] [Related]
14. Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas.
Liseron-Monfils C; Lewis T; Ashlock D; McNicholas PD; Fauteux F; Strömvik M; Raizada MN
BMC Plant Biol; 2013 Mar; 13():42. PubMed ID: 23497159
[TBL] [Abstract][Full Text] [Related]
15. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
Lee TY; Chang WC; Hsu JB; Chang TH; Shien DM
BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
[TBL] [Abstract][Full Text] [Related]
16. Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements.
Doh ST; Zhang Y; Temple MH; Cai L
BMC Bioinformatics; 2007 Mar; 8():94. PubMed ID: 17362514
[TBL] [Abstract][Full Text] [Related]
17. Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Rajewsky N; Vergassola M; Gaul U; Siggia ED
BMC Bioinformatics; 2002 Oct; 3():30. PubMed ID: 12398796
[TBL] [Abstract][Full Text] [Related]
18. Comparative promoter region analysis powered by CORG.
Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
[TBL] [Abstract][Full Text] [Related]
19. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071
[TBL] [Abstract][Full Text] [Related]
20. Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.
Xie D; Cai J; Chia NY; Ng HH; Zhong S
Genome Res; 2008 Aug; 18(8):1325-35. PubMed ID: 18490265
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
