BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 18988624)

  • 21. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNA folding on the 3D triangular lattice.
    Gillespie J; Mayne M; Jiang M
    BMC Bioinformatics; 2009 Nov; 10():369. PubMed ID: 19891777
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Asymmetry in RNA pseudoknots: observation and theory.
    Aalberts DP; Hodas NO
    Nucleic Acids Res; 2005; 33(7):2210-4. PubMed ID: 15831794
    [TBL] [Abstract][Full Text] [Related]  

  • 24. An NMR and mutational study of the pseudoknot within the gene 32 mRNA of bacteriophage T2: insights into a family of structurally related RNA pseudoknots.
    Du Z; Hoffman DW
    Nucleic Acids Res; 1997 Mar; 25(6):1130-5. PubMed ID: 9092620
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Identifying complete RNA structural ensembles including pseudoknots.
    Gupta A; Rahman R; Li K; Gribskov M
    RNA Biol; 2012 Feb; 9(2):187-99. PubMed ID: 22418849
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
    [TBL] [Abstract][Full Text] [Related]  

  • 27. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
    Yang J; Luo Z; Fang X; Wang J; Tang K
    Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Multi-objective genetic algorithm for pseudoknotted RNA sequence design.
    Taneda A
    Front Genet; 2012; 3():36. PubMed ID: 22558001
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prediction of consensus RNA secondary structures including pseudoknots.
    Witwer C; Hofacker IL; Stadler PF
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
    [TBL] [Abstract][Full Text] [Related]  

  • 30. ILM: a web server for predicting RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W146-9. PubMed ID: 15215368
    [TBL] [Abstract][Full Text] [Related]  

  • 31. BPS: a database of RNA base-pair structures.
    Xin Y; Olson WK
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D83-8. PubMed ID: 18845572
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Prediction of RNA pseudoknots using heuristic modeling with mapping and sequential folding.
    Dawson WK; Fujiwara K; Kawai G
    PLoS One; 2007 Sep; 2(9):e905. PubMed ID: 17878940
    [TBL] [Abstract][Full Text] [Related]  

  • 33. From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.
    Smit S; Rother K; Heringa J; Knight R
    RNA; 2008 Mar; 14(3):410-6. PubMed ID: 18230758
    [TBL] [Abstract][Full Text] [Related]  

  • 34. jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs.
    Shabash B; Wiese KC
    PLoS One; 2019; 14(5):e0210281. PubMed ID: 31059508
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.
    Gueneau de Novoa P; Williams KP
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D104-8. PubMed ID: 14681369
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
    Al-Khatib RM; Rashid NA; Abdullah R
    J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs.
    Ieong S; Kao MY; Lam TW; Sung WK; Yiu SM
    J Comput Biol; 2003; 10(6):981-95. PubMed ID: 14980021
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Novel and efficient RNA secondary structure prediction using hierarchical folding.
    Jabbari H; Condon A; Zhao S
    J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
    [TBL] [Abstract][Full Text] [Related]  

  • 39. RNA pseudoknot prediction in energy-based models.
    Lyngsø RB; Pedersen CN
    J Comput Biol; 2000; 7(3-4):409-27. PubMed ID: 11108471
    [TBL] [Abstract][Full Text] [Related]  

  • 40. RNABase: an annotated database of RNA structures.
    Murthy VL; Rose GD
    Nucleic Acids Res; 2003 Jan; 31(1):502-4. PubMed ID: 12520063
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.