152 related articles for article (PubMed ID: 19004873)
21. Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study.
Barman RK; Jana T; Das S; Saha S
PLoS One; 2015; 10(12):e0145648. PubMed ID: 26717407
[TBL] [Abstract][Full Text] [Related]
22. Sequence co-evolution gives 3D contacts and structures of protein complexes.
Hopf TA; Schärfe CP; Rodrigues JP; Green AG; Kohlbacher O; Sander C; Bonvin AM; Marks DS
Elife; 2014 Sep; 3():. PubMed ID: 25255213
[TBL] [Abstract][Full Text] [Related]
23. Integrated access to metabolic and genomic data.
Karp PD; Paley S
J Comput Biol; 1996; 3(1):191-212. PubMed ID: 8697237
[TBL] [Abstract][Full Text] [Related]
24. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Keseler IM; Mackie A; Santos-Zavaleta A; Billington R; Bonavides-Martínez C; Caspi R; Fulcher C; Gama-Castro S; Kothari A; Krummenacker M; Latendresse M; Muñiz-Rascado L; Ong Q; Paley S; Peralta-Gil M; Subhraveti P; Velázquez-Ramírez DA; Weaver D; Collado-Vides J; Paulsen I; Karp PD
Nucleic Acids Res; 2017 Jan; 45(D1):D543-D550. PubMed ID: 27899573
[TBL] [Abstract][Full Text] [Related]
25. u-CARE: user-friendly Comprehensive Antibiotic resistance Repository of Escherichia coli.
Saha SB; Uttam V; Verma V
J Clin Pathol; 2015 Aug; 68(8):648-51. PubMed ID: 25935546
[TBL] [Abstract][Full Text] [Related]
26. EcoCyc: a comprehensive view of Escherichia coli biology.
Keseler IM; Bonavides-Martínez C; Collado-Vides J; Gama-Castro S; Gunsalus RP; Johnson DA; Krummenacker M; Nolan LM; Paley S; Paulsen IT; Peralta-Gil M; Santos-Zavaleta A; Shearer AG; Karp PD
Nucleic Acids Res; 2009 Jan; 37(Database issue):D464-70. PubMed ID: 18974181
[TBL] [Abstract][Full Text] [Related]
27. Profiling of Escherichia coli Chromosome database.
Yamazaki Y; Niki H; Kato J
Methods Mol Biol; 2008; 416():385-9. PubMed ID: 18392982
[TBL] [Abstract][Full Text] [Related]
28. The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Sato T; Yamanishi Y; Kanehisa M; Toh H
Bioinformatics; 2005 Sep; 21(17):3482-9. PubMed ID: 15994190
[TBL] [Abstract][Full Text] [Related]
29. The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Szklarczyk D; Gable AL; Nastou KC; Lyon D; Kirsch R; Pyysalo S; Doncheva NT; Legeay M; Fang T; Bork P; Jensen LJ; von Mering C
Nucleic Acids Res; 2021 Jan; 49(D1):D605-D612. PubMed ID: 33237311
[TBL] [Abstract][Full Text] [Related]
30. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Szklarczyk D; Morris JH; Cook H; Kuhn M; Wyder S; Simonovic M; Santos A; Doncheva NT; Roth A; Bork P; Jensen LJ; von Mering C
Nucleic Acids Res; 2017 Jan; 45(D1):D362-D368. PubMed ID: 27924014
[TBL] [Abstract][Full Text] [Related]
31. wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.
Izarzugaza JM; Vazquez M; del Pozo A; Valencia A
BMC Bioinformatics; 2013 Nov; 14():345. PubMed ID: 24289158
[TBL] [Abstract][Full Text] [Related]
32. MINT: the Molecular INTeraction database.
Chatr-aryamontri A; Ceol A; Palazzi LM; Nardelli G; Schneider MV; Castagnoli L; Cesareni G
Nucleic Acids Res; 2007 Jan; 35(Database issue):D572-4. PubMed ID: 17135203
[TBL] [Abstract][Full Text] [Related]
33. STRING 7--recent developments in the integration and prediction of protein interactions.
von Mering C; Jensen LJ; Kuhn M; Chaffron S; Doerks T; Krüger B; Snel B; Bork P
Nucleic Acids Res; 2007 Jan; 35(Database issue):D358-62. PubMed ID: 17098935
[TBL] [Abstract][Full Text] [Related]
34. A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.
Pacifico S; Liu G; Guest S; Parrish JR; Fotouhi F; Finley RL
BMC Bioinformatics; 2006 Apr; 7():195. PubMed ID: 16603075
[TBL] [Abstract][Full Text] [Related]
35. The protein interaction network mediated by human SH3 domains.
Carducci M; Perfetto L; Briganti L; Paoluzi S; Costa S; Zerweck J; Schutkowski M; Castagnoli L; Cesareni G
Biotechnol Adv; 2012; 30(1):4-15. PubMed ID: 21740962
[TBL] [Abstract][Full Text] [Related]
36. Predicting protein linkages in bacteria: which method is best depends on task.
Karimpour-Fard A; Leach SM; Gill RT; Hunter LE
BMC Bioinformatics; 2008 Sep; 9():397. PubMed ID: 18816389
[TBL] [Abstract][Full Text] [Related]
37. Multidimensional annotation of the Escherichia coli K-12 genome.
Karp PD; Keseler IM; Shearer A; Latendresse M; Krummenacker M; Paley SM; Paulsen I; Collado-Vides J; Gama-Castro S; Peralta-Gil M; Santos-Zavaleta A; Peñaloza-Spínola MI; Bonavides-Martinez C; Ingraham J
Nucleic Acids Res; 2007; 35(22):7577-90. PubMed ID: 17940092
[TBL] [Abstract][Full Text] [Related]
38. PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Hu JC; Sherlock G; Siegele DA; Aleksander SA; Ball CA; Demeter J; Gouni S; Holland TA; Karp PD; Lewis JE; Liles NM; McIntosh BK; Mi H; Muruganujan A; Wymore F; Thomas PD; Altman T
Nucleic Acids Res; 2014 Jan; 42(Database issue):D677-84. PubMed ID: 24285306
[TBL] [Abstract][Full Text] [Related]
39. GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes.
Arakawa K; Yamada Y; Shinoda K; Nakayama Y; Tomita M
BMC Bioinformatics; 2006 Mar; 7():168. PubMed ID: 16553966
[TBL] [Abstract][Full Text] [Related]
40. PRIMOS: an integrated database of reassessed protein-protein interactions providing web-based access to in silico validation of experimentally derived data.
Rid R; Strasser W; Siegl D; Frech C; Kommenda M; Kern T; Hintner H; Bauer JW; Önder K
Assay Drug Dev Technol; 2013 Jun; 11(5):333-46. PubMed ID: 23772554
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]