These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

279 related articles for article (PubMed ID: 19025980)

  • 1. Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions.
    Hvidsten TR; Kryshtafovych A; Fidelis K
    Proteins; 2009 Jun; 75(4):870-84. PubMed ID: 19025980
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins.
    Hvidsten TR; Kryshtafovych A; Komorowski J; Fidelis K
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii81-91. PubMed ID: 14534176
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.
    Björkholm P; Daniluk P; Kryshtafovych A; Fidelis K; Andersson R; Hvidsten TR
    Bioinformatics; 2009 May; 25(10):1264-70. PubMed ID: 19289446
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Library of local descriptors models the core of proteins accurately.
    Drabikowski M; Nowakowski S; Tiuryn J
    Proteins; 2007 Nov; 69(3):499-510. PubMed ID: 17623841
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein structure prediction by threading methods: evaluation of current techniques.
    Lemer CM; Rooman MJ; Wodak SJ
    Proteins; 1995 Nov; 23(3):337-55. PubMed ID: 8710827
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Descriptor-based protein remote homology identification.
    Zhang Z; Kochhar S; Grigorov MG
    Protein Sci; 2005 Feb; 14(2):431-44. PubMed ID: 15632283
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Local structure-based sequence profile database for local and global protein structure predictions.
    Yang AS; Wang LY
    Bioinformatics; 2002 Dec; 18(12):1650-7. PubMed ID: 12490450
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving computational protein design by using structure-derived sequence profile.
    Dai L; Yang Y; Kim HR; Zhou Y
    Proteins; 2010 Aug; 78(10):2338-48. PubMed ID: 20544969
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles.
    Li Z; Yang Y; Faraggi E; Zhan J; Zhou Y
    Proteins; 2014 Oct; 82(10):2565-73. PubMed ID: 24898915
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Customised fragments libraries for protein structure prediction based on structural class annotations.
    Abbass J; Nebel JC
    BMC Bioinformatics; 2015 Apr; 16(1):136. PubMed ID: 25925397
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Use of a structural alphabet to find compatible folds for amino acid sequences.
    Mahajan S; de Brevern AG; Sanejouand YH; Srinivasan N; Offmann B
    Protein Sci; 2015 Jan; 24(1):145-53. PubMed ID: 25297700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evolutionary rates at codon sites may be used to align sequences and infer protein domain function.
    Durand PM; Hazelhurst S; Coetzer TL
    BMC Bioinformatics; 2010 Mar; 11():151. PubMed ID: 20334658
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The protein structure prediction problem could be solved using the current PDB library.
    Zhang Y; Skolnick J
    Proc Natl Acad Sci U S A; 2005 Jan; 102(4):1029-34. PubMed ID: 15653774
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure-dependent sequence alignment for remotely related proteins.
    Yang AS
    Bioinformatics; 2002 Dec; 18(12):1658-65. PubMed ID: 12490451
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.
    Hvidsten TR; Laegreid A; Kryshtafovych A; Andersson G; Fidelis K; Komorowski J
    PLoS One; 2009 Jul; 4(7):e6266. PubMed ID: 19603073
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Docking by structural similarity at protein-protein interfaces.
    Sinha R; Kundrotas PJ; Vakser IA
    Proteins; 2010 Nov; 78(15):3235-41. PubMed ID: 20715056
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
    Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
    [TBL] [Abstract][Full Text] [Related]  

  • 19. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.