BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

345 related articles for article (PubMed ID: 19036135)

  • 1. CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.
    Hestand MS; van Galen M; Villerius MP; van Ommen GJ; den Dunnen JT; 't Hoen PA
    BMC Bioinformatics; 2008 Nov; 9():495. PubMed ID: 19036135
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Integrating genomic data to predict transcription factor binding.
    Holloway DT; Kon M; DeLisi C
    Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
    [TBL] [Abstract][Full Text] [Related]  

  • 3. P-Match: transcription factor binding site search by combining patterns and weight matrices.
    Chekmenev DS; Haid C; Kel AE
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W432-7. PubMed ID: 15980505
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
    Lee TY; Chang WC; Hsu JB; Chang TH; Shien DM
    BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
    Berezikov E; Guryev V; Cuppen E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W447-50. PubMed ID: 15980509
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.
    Kamalakaran S; Radhakrishnan SK; Beck WT
    J Biol Chem; 2005 Jun; 280(22):21491-7. PubMed ID: 15790569
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
    Waleev T; Shtokalo D; Konovalova T; Voss N; Cheremushkin E; Stegmaier P; Kel-Margoulis O; Wingender E; Kel A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W541-5. PubMed ID: 16845066
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
    Berezikov E; Guryev V; Plasterk RH; Cuppen E
    Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
    [TBL] [Abstract][Full Text] [Related]  

  • 9. COTRASIF: conservation-aided transcription-factor-binding site finder.
    Tokovenko B; Golda R; Protas O; Obolenskaya M; El'skaya A
    Nucleic Acids Res; 2009 Apr; 37(7):e49. PubMed ID: 19264796
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.
    Dubchak I; Munoz M; Poliakov A; Salomonis N; Minovitsky S; Bodmer R; Zambon AC
    Bioinformatics; 2013 Aug; 29(16):2059-61. PubMed ID: 23736530
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PromoterPlot: a graphical display of promoter similarities by pattern recognition.
    Di Cara A; Schmidt K; Hemmings BA; Oakeley EJ
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W423-6. PubMed ID: 15980503
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparative promoter region analysis powered by CORG.
    Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
    BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Innate Immune Database (IIDB).
    Korb M; Rust AG; Thorsson V; Battail C; Li B; Hwang D; Kennedy KA; Roach JC; Rosenberger CM; Gilchrist M; Zak D; Johnson C; Marzolf B; Aderem A; Shmulevich I; Bolouri H
    BMC Immunol; 2008 Mar; 9():7. PubMed ID: 18321385
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD; Kohane IS; Riva A
    BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
    Zambelli F; Pesole G; Pavesi G
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W247-52. PubMed ID: 19487240
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Context specific transcription factor prediction.
    Yang E; Simcha D; Almon RR; Dubois DC; Jusko WJ; Androulakis IP
    Ann Biomed Eng; 2007 Jun; 35(6):1053-67. PubMed ID: 17377845
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
    Tsai HK; Chou MY; Shih CH; Huang GT; Chang TH; Li WH
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W221-6. PubMed ID: 17537814
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs.
    Veerla S; Ringnér M; Höglund M
    BMC Genomics; 2010 Mar; 11():145. PubMed ID: 20193056
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer.
    Eisermann K; Tandon S; Bazarov A; Brett A; Fraizer G; Piontkivska H
    BMC Genomics; 2008 Jul; 9():337. PubMed ID: 18631392
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
    Siddharthan R; Siggia ED; van Nimwegen E
    PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.