These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 19052060)

  • 21. Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.
    Münch R; Hiller K; Grote A; Scheer M; Klein J; Schobert M; Jahn D
    Bioinformatics; 2005 Nov; 21(22):4187-9. PubMed ID: 16109747
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields.
    Gan Y; Guan J; Zhou S; Zhang W
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):73-82. PubMed ID: 26355509
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.
    Hughes JR; Cheng JF; Ventress N; Prabhakar S; Clark K; Anguita E; De Gobbi M; de Jong P; Rubin E; Higgs DR
    Proc Natl Acad Sci U S A; 2005 Jul; 102(28):9830-5. PubMed ID: 15998734
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Computational identification of transcriptional regulatory elements in DNA sequence.
    GuhaThakurta D
    Nucleic Acids Res; 2006; 34(12):3585-98. PubMed ID: 16855295
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.
    Li Y; Shi W; Wasserman WW
    BMC Bioinformatics; 2018 May; 19(1):202. PubMed ID: 29855387
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Prediction of genomic functional elements.
    Jones SJ
    Annu Rev Genomics Hum Genet; 2006; 7():315-38. PubMed ID: 16824019
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.
    Arumugam M; Wei C; Brown RH; Brent MR
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S5.1-10. PubMed ID: 16925839
    [TBL] [Abstract][Full Text] [Related]  

  • 28. VISTA: computational tools for comparative genomics.
    Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W273-9. PubMed ID: 15215394
    [TBL] [Abstract][Full Text] [Related]  

  • 29. ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements.
    Taylor J; Tyekucheva S; King DC; Hardison RC; Miller W; Chiaromonte F
    Genome Res; 2006 Dec; 16(12):1596-604. PubMed ID: 17053093
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
    Sinha S; Schroeder MD; Unnerstall U; Gaul U; Siggia ED
    BMC Bioinformatics; 2004 Sep; 5():129. PubMed ID: 15357878
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Methods of identification of pseudogenes based on functionality: hybridization of 18S rRNA and mRNA during translation.
    Xing C
    Methods Mol Biol; 2014; 1167():63-73. PubMed ID: 24823771
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
    Kingsford CL; Ayanbule K; Salzberg SL
    Genome Biol; 2007; 8(2):R22. PubMed ID: 17313685
    [TBL] [Abstract][Full Text] [Related]  

  • 33. CORG: a database for COmparative Regulatory Genomics.
    Dieterich C; Wang H; Rateitschak K; Luz H; Vingron M
    Nucleic Acids Res; 2003 Jan; 31(1):55-7. PubMed ID: 12519946
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Genome-wide computational identification of bicistronic mRNA in humans.
    Lu Y; Zhang Y; Hang X; Qu W; Lubec G; Chen C; Zhang C
    Amino Acids; 2013 Feb; 44(2):597-606. PubMed ID: 22945903
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Visualizing Genomic Annotations with the UCSC Genome Browser.
    Hung JH; Weng Z
    Cold Spring Harb Protoc; 2016 Nov; 2016(11):. PubMed ID: 27574198
    [TBL] [Abstract][Full Text] [Related]  

  • 36. VISTA Enhancer Browser--a database of tissue-specific human enhancers.
    Visel A; Minovitsky S; Dubchak I; Pennacchio LA
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D88-92. PubMed ID: 17130149
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Distinguishing regulatory DNA from neutral sites.
    Elnitski L; Hardison RC; Li J; Yang S; Kolbe D; Eswara P; O'Connor MJ; Schwartz S; Miller W; Chiaromonte F
    Genome Res; 2003 Jan; 13(1):64-72. PubMed ID: 12529307
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Prediction of functional modules based on comparative genome analysis and Gene Ontology application.
    Wu H; Su Z; Mao F; Olman V; Xu Y
    Nucleic Acids Res; 2005; 33(9):2822-37. PubMed ID: 15901854
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach.
    Congdon CB; Aman JC; Nava GM; Gaskins HR; Mattingly CJ
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):1-14. PubMed ID: 18245871
    [TBL] [Abstract][Full Text] [Related]  

  • 40. LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor.
    Sheffield NC; Bock C
    Bioinformatics; 2016 Feb; 32(4):587-9. PubMed ID: 26508757
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.