1435 related articles for article (PubMed ID: 19087345)
1. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
2. A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.
Aoshima K; Takahashi K; Ikawa M; Kimura T; Fukuda M; Tanaka S; Parry HE; Fujita Y; Yoshizawa AC; Utsunomiya S; Kajihara S; Tanaka K; Oda Y
BMC Bioinformatics; 2014 Nov; 15(1):376. PubMed ID: 25420746
[TBL] [Abstract][Full Text] [Related]
3. Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob.
Goeminne LJE; Gevaert K; Clement L
J Proteomics; 2018 Jan; 171():23-36. PubMed ID: 28391044
[TBL] [Abstract][Full Text] [Related]
4. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
Gehlenborg N; Yan W; Lee IY; Yoo H; Nieselt K; Hwang D; Aebersold R; Hood L
Bioinformatics; 2009 Mar; 25(5):682-3. PubMed ID: 19129212
[TBL] [Abstract][Full Text] [Related]
5. StatsPro: Systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitative proteomics.
Yang Y; Cheng J; Wang S; Yang H
J Proteomics; 2022 Jan; 250():104386. PubMed ID: 34600153
[TBL] [Abstract][Full Text] [Related]
6. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
Malm EK; Srivastava V; Sundqvist G; Bulone V
BMC Bioinformatics; 2014 Dec; 15(1):441. PubMed ID: 25547515
[TBL] [Abstract][Full Text] [Related]
7. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.
Braisted JC; Kuntumalla S; Vogel C; Marcotte EM; Rodrigues AR; Wang R; Huang ST; Ferlanti ES; Saeed AI; Fleischmann RD; Peterson SN; Pieper R
BMC Bioinformatics; 2008 Dec; 9():529. PubMed ID: 19068132
[TBL] [Abstract][Full Text] [Related]
8. MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
Hwang D; Zhang N; Lee H; Yi E; Zhang H; Lee IY; Hood L; Aebersold R
Bioinformatics; 2008 Nov; 24(22):2641-2. PubMed ID: 18805798
[TBL] [Abstract][Full Text] [Related]
9. Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.
Ramus C; Hovasse A; Marcellin M; Hesse AM; Mouton-Barbosa E; Bouyssié D; Vaca S; Carapito C; Chaoui K; Bruley C; Garin J; Cianférani S; Ferro M; Van Dorssaeler A; Burlet-Schiltz O; Schaeffer C; Couté Y; Gonzalez de Peredo A
J Proteomics; 2016 Jan; 132():51-62. PubMed ID: 26585461
[TBL] [Abstract][Full Text] [Related]
10. Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Albaum SP; Neuweger H; Fränzel B; Lange S; Mertens D; Trötschel C; Wolters D; Kalinowski J; Nattkemper TW; Goesmann A
Bioinformatics; 2009 Dec; 25(23):3128-34. PubMed ID: 19808875
[TBL] [Abstract][Full Text] [Related]
11. Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
Bouyssié D; Gonzalez de Peredo A; Mouton E; Albigot R; Roussel L; Ortega N; Cayrol C; Burlet-Schiltz O; Girard JP; Monsarrat B
Mol Cell Proteomics; 2007 Sep; 6(9):1621-37. PubMed ID: 17533220
[TBL] [Abstract][Full Text] [Related]
12. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.
Wong JW; Sullivan MJ; Cagney G
Brief Bioinform; 2008 Mar; 9(2):156-65. PubMed ID: 17905794
[TBL] [Abstract][Full Text] [Related]
13. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
LaMarche BL; Crowell KL; Jaitly N; Petyuk VA; Shah AR; Polpitiya AD; Sandoval JD; Kiebel GR; Monroe ME; Callister SJ; Metz TO; Anderson GA; Smith RD
BMC Bioinformatics; 2013 Feb; 14():49. PubMed ID: 23398735
[TBL] [Abstract][Full Text] [Related]
14. Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform.
Letarte S; Brusniak MY; Campbell D; Eddes J; Kemp CJ; Lau H; Mueller L; Schmidt A; Shannon P; Kelly-Spratt KS; Vitek O; Zhang H; Aebersold R; Watts JD
Clin Proteomics; 2008 Dec; 4(3-4):105. PubMed ID: 20157627
[TBL] [Abstract][Full Text] [Related]
15. Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes.
Wang G; Wu WW; Zeng W; Chou CL; Shen RF
J Proteome Res; 2006 May; 5(5):1214-23. PubMed ID: 16674111
[TBL] [Abstract][Full Text] [Related]
16. Software platform for rapidly creating computational tools for mass spectrometry-based proteomics.
May D; Law W; Fitzgibbon M; Fang Q; McIntosh M
J Proteome Res; 2009 Jun; 8(6):3212-7. PubMed ID: 19309175
[TBL] [Abstract][Full Text] [Related]
17. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
Mueller LN; Rinner O; Schmidt A; Letarte S; Bodenmiller B; Brusniak MY; Vitek O; Aebersold R; Müller M
Proteomics; 2007 Oct; 7(19):3470-80. PubMed ID: 17726677
[TBL] [Abstract][Full Text] [Related]
18. iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.
Yang TH; Chang HT; Hsiao ES; Sun JL; Wang CC; Wu HY; Liao PC; Wu WS
BMC Bioinformatics; 2014; 15 Suppl 16(Suppl 16):S10. PubMed ID: 25521246
[TBL] [Abstract][Full Text] [Related]
19. MSSimulator: Simulation of mass spectrometry data.
Bielow C; Aiche S; Andreotti S; Reinert K
J Proteome Res; 2011 Jul; 10(7):2922-9. PubMed ID: 21526843
[TBL] [Abstract][Full Text] [Related]
20. ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Brusniak MY; Kwok ST; Christiansen M; Campbell D; Reiter L; Picotti P; Kusebauch U; Ramos H; Deutsch EW; Chen J; Moritz RL; Aebersold R
BMC Bioinformatics; 2011 Mar; 12():78. PubMed ID: 21414234
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
