These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 19119992)

  • 1. Exact calculation of distributions on integers, with application to sequence alignment.
    Newberg LA; Lawrence CE
    J Comput Biol; 2009 Jan; 16(1):1-18. PubMed ID: 19119992
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Measuring global credibility with application to local sequence alignment.
    Webb-Robertson BJ; McCue LA; Lawrence CE
    PLoS Comput Biol; 2008 May; 4(5):e1000077. PubMed ID: 18464927
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 4. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
    Dalli D; Wilm A; Mainz I; Steger G
    Bioinformatics; 2006 Jul; 22(13):1593-9. PubMed ID: 16613908
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Significance of gapped sequence alignments.
    Newberg LA
    J Comput Biol; 2008 Nov; 15(9):1187-94. PubMed ID: 18973434
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The construction and use of log-odds substitution scores for multiple sequence alignment.
    Altschul SF; Wootton JC; Zaslavsky E; Yu YK
    PLoS Comput Biol; 2010 Jul; 6(7):e1000852. PubMed ID: 20657661
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dynamic programming.
    Nalbantoğlu ÖU
    Methods Mol Biol; 2014; 1079():3-27. PubMed ID: 24170392
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
    Siddharthan R; Siggia ED; van Nimwegen E
    PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bayesian models and algorithms for protein β-sheet prediction.
    Aydin Z; Altunbasak Y; Erdogan H
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):395-409. PubMed ID: 21233522
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A pairwise alignment algorithm which favors clusters of blocks.
    Nédélec E; Moncion T; Gassiat E; Bossard B; Duchateau-Nguyen G; Denise A; Termier M
    J Comput Biol; 2005; 12(1):33-47. PubMed ID: 15725732
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cache-oblivious dynamic programming for bioinformatics.
    Chowdhury RA; Le HS; Ramachandran V
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(3):495-510. PubMed ID: 20671320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
    Asai K; Hamada M
    Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bayesian adaptive alignment and inference.
    Zhu J; Liu J; Lawrence C
    Proc Int Conf Intell Syst Mol Biol; 1997; 5():358-68. PubMed ID: 9322062
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A hierarchical model for incomplete alignments in phylogenetic inference.
    Cheng F; Hartmann S; Gupta M; Ibrahim JG; Vision TJ
    Bioinformatics; 2009 Mar; 25(5):592-8. PubMed ID: 19147663
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bayesian adaptive sequence alignment algorithms.
    Zhu J; Liu JS; Lawrence CE
    Bioinformatics; 1998; 14(1):25-39. PubMed ID: 9520499
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evolutionary triplet models of structured RNA.
    Bradley RK; Holmes I
    PLoS Comput Biol; 2009 Aug; 5(8):e1000483. PubMed ID: 19714212
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination.
    Lücking R; Hodkinson BP; Stamatakis A; Cartwright RA
    BMC Bioinformatics; 2011 Jan; 12():10. PubMed ID: 21214904
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Score distributions of gapped multiple sequence alignments down to the low-probability tail.
    Fieth P; Hartmann AK
    Phys Rev E; 2016 Aug; 94(2-1):022127. PubMed ID: 27627266
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.