236 related articles for article (PubMed ID: 19147665)
1. PROMOT: modular modeling for systems biology.
Mirschel S; Steinmetz K; Rempel M; Ginkel M; Gilles ED
Bioinformatics; 2009 Mar; 25(5):687-9. PubMed ID: 19147665
[TBL] [Abstract][Full Text] [Related]
2. Visual setup of logical models of signaling and regulatory networks with ProMoT.
Saez-Rodriguez J; Mirschel S; Hemenway R; Klamt S; Gilles ED; Ginkel M
BMC Bioinformatics; 2006 Nov; 7():506. PubMed ID: 17109765
[TBL] [Abstract][Full Text] [Related]
3. Modular modeling of cellular systems with ProMoT/Diva.
Ginkel M; Kremling A; Nutsch T; Rehner R; Gilles ED
Bioinformatics; 2003 Jun; 19(9):1169-76. PubMed ID: 12801880
[TBL] [Abstract][Full Text] [Related]
4. A model diagram layout extension for SBML.
Gauges R; Rost U; Sahle S; Wegner K
Bioinformatics; 2006 Aug; 22(15):1879-85. PubMed ID: 16709586
[TBL] [Abstract][Full Text] [Related]
5. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
6. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
Zi Z
Bioinformatics; 2011 Apr; 27(7):1028-9. PubMed ID: 21303862
[TBL] [Abstract][Full Text] [Related]
7. SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM; Bornstein BJ; Finney A; Hucka M
Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
[TBL] [Abstract][Full Text] [Related]
8. Arcadia: a visualization tool for metabolic pathways.
Villéger AC; Pettifer SR; Kell DB
Bioinformatics; 2010 Jun; 26(11):1470-1. PubMed ID: 20453003
[TBL] [Abstract][Full Text] [Related]
9. Tools for the SBML Community.
Gillespie CS; Wilkinson DJ; Proctor CJ; Shanley DP; Boys RJ; Kirkwood TB
Bioinformatics; 2006 Mar; 22(5):628-9. PubMed ID: 16410323
[TBL] [Abstract][Full Text] [Related]
10. Payao: a community platform for SBML pathway model curation.
Matsuoka Y; Ghosh S; Kikuchi N; Kitano H
Bioinformatics; 2010 May; 26(10):1381-3. PubMed ID: 20371497
[TBL] [Abstract][Full Text] [Related]
11. SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A; Richter S; Stein M; Sahle S; Gauges R; Gabdoulline R; Surovtsova I; Semmelrock N; Besson B; Rojas I; Wade R; Kummer U
Bioinformatics; 2008 Jun; 24(12):1463-4. PubMed ID: 18463116
[TBL] [Abstract][Full Text] [Related]
12. Annotation and merging of SBML models with semanticSBML.
Krause F; Uhlendorf J; Lubitz T; Schulz M; Klipp E; Liebermeister W
Bioinformatics; 2010 Feb; 26(3):421-2. PubMed ID: 19933161
[TBL] [Abstract][Full Text] [Related]
13. cPath: open source software for collecting, storing, and querying biological pathways.
Cerami EG; Bader GD; Gross BE; Sander C
BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
[TBL] [Abstract][Full Text] [Related]
14. LibSBML: an API library for SBML.
Bornstein BJ; Keating SM; Jouraku A; Hucka M
Bioinformatics; 2008 Mar; 24(6):880-1. PubMed ID: 18252737
[TBL] [Abstract][Full Text] [Related]
15. Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB).
Palmisano A; Hoops S; Watson LT; Jones TC; Tyson JJ; Shaffer CA
Methods Mol Biol; 2019; 1945():119-139. PubMed ID: 30945244
[TBL] [Abstract][Full Text] [Related]
16. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
Zi Z; Klipp E
Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
[TBL] [Abstract][Full Text] [Related]
17. Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules.
Saez-Rodriguez J; Gayer S; Ginkel M; Gilles ED
Bioinformatics; 2008 Aug; 24(16):i213-9. PubMed ID: 18689828
[TBL] [Abstract][Full Text] [Related]
18. The Taverna Interaction Service: enabling manual interaction in workflows.
Lanzén A; Oinn T
Bioinformatics; 2008 Apr; 24(8):1118-20. PubMed ID: 18337261
[TBL] [Abstract][Full Text] [Related]
19. Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.
Reyes-Palomares A; Montañez R; Real-Chicharro A; Chniber O; Kerzazi A; Navas-Delgado I; Medina MA; Aldana-Montes JF; Sánchez-Jiménez F
Bioinformatics; 2009 Mar; 25(6):834-5. PubMed ID: 19189977
[TBL] [Abstract][Full Text] [Related]
20. Using process diagrams for the graphical representation of biological networks.
Kitano H; Funahashi A; Matsuoka Y; Oda K
Nat Biotechnol; 2005 Aug; 23(8):961-6. PubMed ID: 16082367
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]