These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
385 related articles for article (PubMed ID: 19148271)
1. Phylogenetic and functional assessment of orthologs inference projects and methods. Altenhoff AM; Dessimoz C PLoS Comput Biol; 2009 Jan; 5(1):e1000262. PubMed ID: 19148271 [TBL] [Abstract][Full Text] [Related]
2. Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Boeckmann B; Robinson-Rechavi M; Xenarios I; Dessimoz C Brief Bioinform; 2011 Sep; 12(5):423-35. PubMed ID: 21737420 [TBL] [Abstract][Full Text] [Related]
3. Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits. Dessimoz C; Boeckmann B; Roth AC; Gonnet GH Nucleic Acids Res; 2006; 34(11):3309-16. PubMed ID: 16835308 [TBL] [Abstract][Full Text] [Related]
4. Computational methods for Gene Orthology inference. Kristensen DM; Wolf YI; Mushegian AR; Koonin EV Brief Bioinform; 2011 Sep; 12(5):379-91. PubMed ID: 21690100 [TBL] [Abstract][Full Text] [Related]
5. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. Remm M; Storm CE; Sonnhammer EL J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721 [TBL] [Abstract][Full Text] [Related]
7. Standardized benchmarking in the quest for orthologs. Altenhoff AM; Boeckmann B; Capella-Gutierrez S; Dalquen DA; DeLuca T; Forslund K; Huerta-Cepas J; Linard B; Pereira C; Pryszcz LP; Schreiber F; da Silva AS; Szklarczyk D; Train CM; Bork P; Lecompte O; von Mering C; Xenarios I; Sjölander K; Jensen LJ; Martin MJ; Muffato M; ; Gabaldón T; Lewis SE; Thomas PD; Sonnhammer E; Dessimoz C Nat Methods; 2016 May; 13(5):425-30. PubMed ID: 27043882 [TBL] [Abstract][Full Text] [Related]
8. The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study. Dalquen DA; Altenhoff AM; Gonnet GH; Dessimoz C PLoS One; 2013; 8(2):e56925. PubMed ID: 23451112 [TBL] [Abstract][Full Text] [Related]
9. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score. Pryszcz LP; Huerta-Cepas J; Gabaldón T Nucleic Acids Res; 2011 Mar; 39(5):e32. PubMed ID: 21149260 [TBL] [Abstract][Full Text] [Related]
10. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper. Huerta-Cepas J; Forslund K; Coelho LP; Szklarczyk D; Jensen LJ; von Mering C; Bork P Mol Biol Evol; 2017 Aug; 34(8):2115-2122. PubMed ID: 28460117 [TBL] [Abstract][Full Text] [Related]
11. Bayesian gene/species tree reconciliation and orthology analysis using MCMC. Arvestad L; Berglund AC; Lagergren J; Sennblad B Bioinformatics; 2003; 19 Suppl 1():i7-15. PubMed ID: 12855432 [TBL] [Abstract][Full Text] [Related]
12. QuartetS: a fast and accurate algorithm for large-scale orthology detection. Yu C; Zavaljevski N; Desai V; Reifman J Nucleic Acids Res; 2011 Jul; 39(13):e88. PubMed ID: 21572104 [TBL] [Abstract][Full Text] [Related]