These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 19154133)

  • 1. Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide.
    Periole X; Rampioni A; Vendruscolo M; Mark AE
    J Phys Chem B; 2009 Feb; 113(6):1728-37. PubMed ID: 19154133
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets.
    Yang AS; Honig B
    J Mol Biol; 1995 Sep; 252(3):366-76. PubMed ID: 7563057
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing.
    Lipfert J; Franklin J; Wu F; Doniach S
    J Mol Biol; 2005 Jun; 349(3):648-58. PubMed ID: 15896350
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structure and assembly of designed beta-hairpin peptides in crystals as models for beta-sheet aggregation.
    Aravinda S; Harini VV; Shamala N; Das C; Balaram P
    Biochemistry; 2004 Feb; 43(7):1832-46. PubMed ID: 14967024
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Natural polyphenols as inhibitors of amyloid aggregation. Molecular dynamics study of GNNQQNY heptapeptide decamer.
    Berhanu WM; Masunov AE
    Biophys Chem; 2010 Jun; 149(1-2):12-21. PubMed ID: 20456856
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Molecular simulations of beta-sheet twisting.
    Wang L; O'Connell T; Tropsha A; Hermans J
    J Mol Biol; 1996 Sep; 262(2):283-93. PubMed ID: 8831794
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Exploiting diverse stereochemistry of β-amino acids: toward a rational design of sheet-forming β-peptide systems.
    Pohl G; Beke-Somfai T; Csizmadia IG; Perczel A
    Amino Acids; 2012 Aug; 43(2):735-49. PubMed ID: 22057667
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dual binding modes of Congo red to amyloid protofibril surface observed in molecular dynamics simulations.
    Wu C; Wang Z; Lei H; Zhang W; Duan Y
    J Am Chem Soc; 2007 Feb; 129(5):1225-32. PubMed ID: 17263405
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assembly dynamics of two-beta sheets revealed by molecular dynamics simulations.
    Xu W; Ping J; Li W; Mu Y
    J Chem Phys; 2009 Apr; 130(16):164709. PubMed ID: 19405618
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Stability of single sheet GNNQQNY aggregates analyzed by replica exchange molecular dynamics: antiparallel versus parallel association.
    Vitagliano L; Esposito L; Pedone C; De Simone A
    Biochem Biophys Res Commun; 2008 Dec; 377(4):1036-41. PubMed ID: 18938138
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Factors involved in the stability of isolated beta-sheets: Turn sequence, beta-sheet twisting, and hydrophobic surface burial.
    Santiveri CM; Santoro J; Rico M; Jiménez MA
    Protein Sci; 2004 Apr; 13(4):1134-47. PubMed ID: 15044739
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Theoretical study of sheets formed by beta-peptides.
    Lin JQ; Luo SW; Wu YD
    J Comput Chem; 2002 Dec; 23(16):1551-8. PubMed ID: 12395424
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular dynamics simulations of solvated crystal models of cellulose I(alpha) and III(I).
    Yui T; Hayashi S
    Biomacromolecules; 2007 Mar; 8(3):817-24. PubMed ID: 17286383
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metadynamics simulation of prion protein: beta-structure stability and the early stages of misfolding.
    Barducci A; Chelli R; Procacci P; Schettino V; Gervasio FL; Parrinello M
    J Am Chem Soc; 2006 Mar; 128(8):2705-10. PubMed ID: 16492057
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulation of antimicrobial peptide arenicin-2: beta-hairpin stabilization by noncovalent interactions.
    Stavrakoudis A; Tsoulos IG; Shenkarev ZO; Ovchinnikova TV
    Biopolymers; 2009; 92(3):143-55. PubMed ID: 19189382
    [TBL] [Abstract][Full Text] [Related]  

  • 16. How well does Poisson-Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis.
    Tan C; Yang L; Luo R
    J Phys Chem B; 2006 Sep; 110(37):18680-7. PubMed ID: 16970499
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent.
    Wu C; Lei H; Duan Y
    J Am Chem Soc; 2005 Oct; 127(39):13530-7. PubMed ID: 16190716
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Structural diversity of the soluble trimers of the human amylin(20-29) peptide revealed by molecular dynamics simulations.
    Mo Y; Lu Y; Wei G; Derreumaux P
    J Chem Phys; 2009 Mar; 130(12):125101. PubMed ID: 19334894
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics study of amyloid formation of two Abl-SH3 domain peptides.
    Liepina I; Ventura S; Czaplewski C; Liwo A
    J Pept Sci; 2006 Dec; 12(12):780-9. PubMed ID: 17131290
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural reorganization of molecular sheets derived from cellulose II by molecular dynamics simulations.
    Miyamoto H; Umemura M; Aoyagi T; Yamane C; Ueda K; Takahashi K
    Carbohydr Res; 2009 Jun; 344(9):1085-94. PubMed ID: 19375694
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.