These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

282 related articles for article (PubMed ID: 19170085)

  • 1. SHARPEN-systematic hierarchical algorithms for rotamers and proteins on an extended network.
    Loksha IV; Maiolo JR; Hong CW; Ng A; Snow CD
    J Comput Chem; 2009 Apr; 30(6):999-1005. PubMed ID: 19170085
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An object-oriented library for computational protein design.
    Chowdry AB; Reynolds KA; Hanes MS; Voorhies M; Pokala N; Handel TM
    J Comput Chem; 2007 Nov; 28(14):2378-88. PubMed ID: 17471459
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.
    Das R; Qian B; Raman S; Vernon R; Thompson J; Bradley P; Khare S; Tyka MD; Bhat D; Chivian D; Kim DE; Sheffler WH; Malmström L; Wollacott AM; Wang C; Andre I; Baker D
    Proteins; 2007; 69 Suppl 8():118-28. PubMed ID: 17894356
    [TBL] [Abstract][Full Text] [Related]  

  • 4. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
    Spassov VZ; Flook PK; Yan L
    Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Exact rotamer optimization for protein design.
    Gordon DB; Hom GK; Mayo SL; Pierce NA
    J Comput Chem; 2003 Jan; 24(2):232-43. PubMed ID: 12497602
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.
    May A; Zacharias M
    Proteins; 2007 Dec; 69(4):774-80. PubMed ID: 17803217
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dramatic performance enhancements for the FASTER optimization algorithm.
    Allen BD; Mayo SL
    J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automated design of specificity in molecular recognition.
    Havranek JJ; Harbury PB
    Nat Struct Biol; 2003 Jan; 10(1):45-52. PubMed ID: 12459719
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A large-scale computational approach to drug repositioning.
    Li YY; An J; Jones SJ
    Genome Inform; 2006; 17(2):239-47. PubMed ID: 17503396
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking.
    Del Carpio Munoz CA; Peissker T; Yoshimori A; Ichiishi E
    Genome Inform; 2003; 14():238-49. PubMed ID: 15706538
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein design for diversity of sequences and conformations using dead-end elimination.
    Hanf KJ
    Methods Mol Biol; 2012; 899():127-44. PubMed ID: 22735950
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BALLDock/SLICK: a new method for protein-carbohydrate docking.
    Kerzmann A; Fuhrmann J; Kohlbacher O; Neumann D
    J Chem Inf Model; 2008 Aug; 48(8):1616-25. PubMed ID: 18646839
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ATTRACT and PTools: open source programs for protein-protein docking.
    Schneider S; Saladin A; Fiorucci S; Prévost C; Zacharias M
    Methods Mol Biol; 2012; 819():221-32. PubMed ID: 22183540
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
    Heifetz A; Pal S; Smith GR
    Proteins; 2007 Dec; 69(4):816-22. PubMed ID: 17803214
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Constructing computational pipelines.
    Halling-Brown M; Shepherd AJ
    Methods Mol Biol; 2008; 453():451-70. PubMed ID: 18712319
    [TBL] [Abstract][Full Text] [Related]  

  • 17. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps.
    Suhre K; Navaza J; Sanejouand YH
    Acta Crystallogr D Biol Crystallogr; 2006 Sep; 62(Pt 9):1098-100. PubMed ID: 16929111
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Docking of protein molecular surfaces with evolutionary trace analysis.
    Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
    Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR; Kozakov D; Brenke R; Shen Y; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):781-5. PubMed ID: 17876812
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computational protein design: software implementation, parameter optimization, and performance of a simple model.
    Schmidt Am Busch M; Lopes A; Mignon D; Simonson T
    J Comput Chem; 2008 May; 29(7):1092-102. PubMed ID: 18069664
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.