285 related articles for article (PubMed ID: 19173299)
1. Genomic location analysis by ChIP-Seq.
Barski A; Zhao K
J Cell Biochem; 2009 May; 107(1):11-8. PubMed ID: 19173299
[TBL] [Abstract][Full Text] [Related]
2. Insights from genomic profiling of transcription factors.
Farnham PJ
Nat Rev Genet; 2009 Sep; 10(9):605-16. PubMed ID: 19668247
[TBL] [Abstract][Full Text] [Related]
3. Integrative analysis of ChIP-chip and ChIP-seq dataset.
Zhu LJ
Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide occupancy analysis by ChIP-chip and ChIP-Seq.
Hao H
Adv Exp Med Biol; 2012; 723():753-9. PubMed ID: 22183403
[No Abstract] [Full Text] [Related]
5. DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments.
Wu F; Olson BG; Yao J
J Vis Exp; 2016 Jan; (107):e53620. PubMed ID: 26862720
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide identification of transcription factor-binding sites in plants using chromatin immunoprecipitation followed by microarray (ChIP-chip) or sequencing (ChIP-seq).
Zhu JY; Sun Y; Wang ZY
Methods Mol Biol; 2012; 876():173-88. PubMed ID: 22576095
[TBL] [Abstract][Full Text] [Related]
7. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
[TBL] [Abstract][Full Text] [Related]
8. Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.
Lefrançois P; Euskirchen GM; Auerbach RK; Rozowsky J; Gibson T; Yellman CM; Gerstein M; Snyder M
BMC Genomics; 2009 Jan; 10():37. PubMed ID: 19159457
[TBL] [Abstract][Full Text] [Related]
9. dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data.
Chung D; Park D; Myers K; Grass J; Kiley P; Landick R; Keleş S
PLoS Comput Biol; 2013; 9(10):e1003246. PubMed ID: 24146601
[TBL] [Abstract][Full Text] [Related]
10. Mapping E. coli RNA polymerase and associated transcription factors and identifying promoters genome-wide.
Davis SE; Mooney RA; Kanin EI; Grass J; Landick R; Ansari AZ
Methods Enzymol; 2011; 498():449-71. PubMed ID: 21601690
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
Hussey SG; Mizrachi E; Groover A; Berger DK; Myburg AA
BMC Plant Biol; 2015 May; 15():117. PubMed ID: 25957781
[TBL] [Abstract][Full Text] [Related]
12. Genome-Wide Mapping of Protein-DNA Interactions on Nascent Chromatin.
Xu C; Corces VG
Methods Mol Biol; 2018; 1766():231-238. PubMed ID: 29605856
[TBL] [Abstract][Full Text] [Related]
13. Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data.
Chung D; Kuan PF; Li B; Sanalkumar R; Liang K; Bresnick EH; Dewey C; Keleş S
PLoS Comput Biol; 2011 Jul; 7(7):e1002111. PubMed ID: 21779159
[TBL] [Abstract][Full Text] [Related]
14. MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data.
Chen Y; Meyer CA; Liu T; Li W; Liu JS; Liu XS
Genome Biol; 2011; 12(2):R11. PubMed ID: 21284836
[TBL] [Abstract][Full Text] [Related]
15. Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.
Liu X; Jessen WJ; Sivaganesan S; Aronow BJ; Medvedovic M
BMC Bioinformatics; 2007 Aug; 8():283. PubMed ID: 17683565
[TBL] [Abstract][Full Text] [Related]
16. A map of direct TF-DNA interactions in the human genome.
Gheorghe M; Sandve GK; Khan A; Chèneby J; Ballester B; Mathelier A
Nucleic Acids Res; 2019 Feb; 47(4):e21. PubMed ID: 30517703
[TBL] [Abstract][Full Text] [Related]
17. Using CisGenome to analyze ChIP-chip and ChIP-seq data.
Ji H; Jiang H; Ma W; Wong WH
Curr Protoc Bioinformatics; 2011 Mar; Chapter 2():Unit2.13. PubMed ID: 21400695
[TBL] [Abstract][Full Text] [Related]
18. Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).
Shibata Y; Crawford GE
Methods Mol Biol; 2009; 556():177-90. PubMed ID: 19488879
[TBL] [Abstract][Full Text] [Related]
19. Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.
Handa T; Harada A; Maehara K; Sato S; Nakao M; Goto N; Kurumizaka H; Ohkawa Y; Kimura H
Nat Protoc; 2020 Oct; 15(10):3334-3360. PubMed ID: 32807906
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing.
Raghav SK; Deplancke B
Methods Mol Biol; 2012; 786():247-62. PubMed ID: 21938631
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
