51 related articles for article (PubMed ID: 19209706)
1. Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks.
Tamada Y; Araki H; Imoto S; Nagasaki M; Doi A; Nakanishi Y; Tomiyasu Y; Yasuda K; Dunmore B; Sanders D; Humphreys S; Print C; Charnock-Jones DS; Tashiro K; Kuhara S; Miyano S
Pac Symp Biocomput; 2009; ():251-63. PubMed ID: 19209706
[TBL] [Abstract][Full Text] [Related]
2. Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
Imoto S; Tamada Y; Araki H; Yasuda K; Print CG; Charnock-Jones SD; Sanders D; Savoie CJ; Tashiro K; Kuhara S; Miyano S
Pac Symp Biocomput; 2006; ():559-71. PubMed ID: 17094269
[TBL] [Abstract][Full Text] [Related]
3. Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells.
Araki H; Tamada Y; Imoto S; Dunmore B; Sanders D; Humphrey S; Nagasaki M; Doi A; Nakanishi Y; Yasuda K; Tomiyasu Y; Tashiro K; Print C; Charnock-Jones DS; Kuhara S; Miyano S
Angiogenesis; 2009; 12(3):221-9. PubMed ID: 19357976
[TBL] [Abstract][Full Text] [Related]
4. Identifying drug active pathways from gene networks estimated by gene expression data.
Tamada Y; Imoto S; Tashiro K; Kuhara S; Miyano S
Genome Inform; 2005; 16(1):182-91. PubMed ID: 16362921
[TBL] [Abstract][Full Text] [Related]
5. Weighted gene coexpression network analysis: state of the art.
Zhao W; Langfelder P; Fuller T; Dong J; Li A; Hovarth S
J Biopharm Stat; 2010 Mar; 20(2):281-300. PubMed ID: 20309759
[TBL] [Abstract][Full Text] [Related]
6. An empirical Bayesian method for estimating biological networks from temporal microarray data.
Rau A; Jaffrézic F; Foulley JL; Doerge RW
Stat Appl Genet Mol Biol; 2010; 9():Article 9. PubMed ID: 20196759
[TBL] [Abstract][Full Text] [Related]
7. The natural carotenoid astaxanthin, a PPAR-α agonist and PPAR-γ antagonist, reduces hepatic lipid accumulation by rewiring the transcriptome in lipid-loaded hepatocytes.
Jia Y; Kim JY; Jun HJ; Kim SJ; Lee JH; Hoang MH; Hwang KY; Um SJ; Chang HI; Lee SJ
Mol Nutr Food Res; 2012 Jun; 56(6):878-88. PubMed ID: 22707263
[TBL] [Abstract][Full Text] [Related]
8. Disease genes and intracellular protein networks.
Bortoluzzi S; Romualdi C; Bisognin A; Danieli GA
Physiol Genomics; 2003 Nov; 15(3):223-7. PubMed ID: 12966136
[TBL] [Abstract][Full Text] [Related]
9. Identifying dynamic network modules with temporal and spatial constraints.
Jin R; McCallen S; Liu CC; Xiang Y; Almaas E; Zhou XJ
Pac Symp Biocomput; 2009; ():203-14. PubMed ID: 19209702
[TBL] [Abstract][Full Text] [Related]
10. Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.
Tari L; Hakenberg J; Gonzalez G; Baral C
Pac Symp Biocomput; 2009; ():87-98. PubMed ID: 19209697
[TBL] [Abstract][Full Text] [Related]
11. Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks.
Li H; Gui J
Biostatistics; 2006 Apr; 7(2):302-17. PubMed ID: 16326758
[TBL] [Abstract][Full Text] [Related]
12. Perturbation of autocrine/paracrine loops of burst-forming units of erythroid-derived cells in rHuEPO-hyporesponsive hemodialysis patients.
Nakao K; Wada J; Ota K; Ichikawa H; Akagi S; Okamoto A; Hida K; Nagake Y; Makino H
Am J Kidney Dis; 2003 Mar; 41(3):624-36. PubMed ID: 12612986
[TBL] [Abstract][Full Text] [Related]
13. Analysis of gene networks for drug target discovery and validation.
Imoto S; Tamada Y; Savoie CJ; Miyano S
Methods Mol Biol; 2007; 360():33-56. PubMed ID: 17172724
[TBL] [Abstract][Full Text] [Related]
14. A protein interaction network associated with asthma.
Hwang S; Son SW; Kim SC; Kim YJ; Jeong H; Lee D
J Theor Biol; 2008 Jun; 252(4):722-31. PubMed ID: 18395227
[TBL] [Abstract][Full Text] [Related]
15. A tail strength measure for assessing the overall univariate significance in a dataset.
Taylor J; Tibshirani R
Biostatistics; 2006 Apr; 7(2):167-81. PubMed ID: 16332926
[TBL] [Abstract][Full Text] [Related]
16. D-Serine exposure resulted in gene expression changes implicated in neurodegenerative disorders and neuronal dysfunction in male Fischer 344 rats.
Davidson ME; Kerepesi LA; Soto A; Chan VT
Arch Toxicol; 2009 Aug; 83(8):747-62. PubMed ID: 19212759
[TBL] [Abstract][Full Text] [Related]
17. Reconstructing biological networks using conditional correlation analysis.
Rice JJ; Tu Y; Stolovitzky G
Bioinformatics; 2005 Mar; 21(6):765-73. PubMed ID: 15486043
[TBL] [Abstract][Full Text] [Related]
18. Graph kernels for disease outcome prediction from protein-protein interaction networks.
Borgwardt KM; Kriegel HP; Vishwanathan SV; Schraudolph NN
Pac Symp Biocomput; 2007; ():4-15. PubMed ID: 17992741
[TBL] [Abstract][Full Text] [Related]
19. Gene expression: protein interaction systems network modeling identifies transformation-associated molecules and pathways in ovarian cancer.
Bapat SA; Krishnan A; Ghanate AD; Kusumbe AP; Kalra RS
Cancer Res; 2010 Jun; 70(12):4809-19. PubMed ID: 20530682
[TBL] [Abstract][Full Text] [Related]
20. Transcriptional networks in a rat model for nonalcoholic fatty liver disease: a microarray analysis.
Sharma MR; Polavarapu R; Roseman D; Patel V; Eaton E; Kishor PB; Nanji AA
Exp Mol Pathol; 2006 Dec; 81(3):202-10. PubMed ID: 16949573
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
