These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 19222389)

  • 21. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.
    Tateno Y; Takezaki N; Nei M
    Mol Biol Evol; 1994 Mar; 11(2):261-77. PubMed ID: 8170367
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony.
    Tourasse NJ; Gouy M
    Mol Biol Evol; 1997 Mar; 14(3):287-98. PubMed ID: 9066796
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Angiosperm divergence times: the effect of genes, codon positions, and time constraints.
    Magallón SA; Sanderson MJ
    Evolution; 2005 Aug; 59(8):1653-70. PubMed ID: 16329238
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
    Yang Z
    Mol Biol Evol; 1993 Nov; 10(6):1396-401. PubMed ID: 8277861
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
    Kosakovsky Pond SL; Frost SD
    Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Models of amino acid substitution and applications to mitochondrial protein evolution.
    Yang Z; Nielsen R; Hasegawa M
    Mol Biol Evol; 1998 Dec; 15(12):1600-11. PubMed ID: 9866196
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Using evolutionary Expectation Maximization to estimate indel rates.
    Holmes I
    Bioinformatics; 2005 May; 21(10):2294-300. PubMed ID: 15731213
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Pitfalls of the most commonly used models of context dependent substitution.
    Lindsay H; Yap VB; Ying H; Huttley GA
    Biol Direct; 2008 Dec; 3():52. PubMed ID: 19087239
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Evolution of base-substitution gradients in primate mitochondrial genomes.
    Raina SZ; Faith JJ; Disotell TR; Seligmann H; Stewart CB; Pollock DD
    Genome Res; 2005 May; 15(5):665-73. PubMed ID: 15867428
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Codon and rate variation models in molecular phylogeny.
    Schadt E; Lange K
    Mol Biol Evol; 2002 Sep; 19(9):1534-49. PubMed ID: 12200481
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Variation in the pattern of nucleotide substitution across sites.
    Huelsenbeck JP; Nielsen R
    J Mol Evol; 1999 Jan; 48(1):86-93. PubMed ID: 9873080
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species.
    Yang Z; Yoder AD
    Syst Biol; 2003 Oct; 52(5):705-16. PubMed ID: 14530137
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
    Muse SV; Gaut BS
    Mol Biol Evol; 1994 Sep; 11(5):715-24. PubMed ID: 7968485
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The genetic code can cause systematic bias in simple phylogenetic models.
    Whelan S
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4003-11. PubMed ID: 18852102
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference.
    Krishnan NM; Seligmann H; Stewart CB; De Koning AP; Pollock DD
    Mol Biol Evol; 2004 Oct; 21(10):1871-83. PubMed ID: 15229290
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Model of amino acid substitution in proteins encoded by mitochondrial DNA.
    Adachi J; Hasegawa M
    J Mol Evol; 1996 Apr; 42(4):459-68. PubMed ID: 8642615
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Inferring complex DNA substitution processes on phylogenies using uniformization and data augmentation.
    Mateiu L; Rannala B
    Syst Biol; 2006 Apr; 55(2):259-69. PubMed ID: 16551582
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A simple hierarchical approach to modeling distributions of substitution rates.
    Pond SL; Frost SD
    Mol Biol Evol; 2005 Feb; 22(2):223-34. PubMed ID: 15483327
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Estimation of phylogeny and invariant sites under the general Markov model of nucleotide sequence evolution.
    Jayaswal V; Robinson J; Jermiin L
    Syst Biol; 2007 Apr; 56(2):155-62. PubMed ID: 17454972
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.