These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 19238243)

  • 1. Never born proteins as a test case for ab initio protein structures prediction.
    Minervini G; Evangelista G; Polticelli F; Piwowar M; Kochanczyk M; Flis L; Malawski M; Szepieniec T; Wiśniowski Z; Matczyńska E; Prymula K; Roterman I
    Bioinformation; 2008; 3(4):177-9. PubMed ID: 19238243
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Massive non-natural proteins structure prediction using grid technologies.
    Minervini G; Evangelista G; Villanova L; Slanzi D; De Lucrezia D; Poli I; Luisi PL; Polticelli F
    BMC Bioinformatics; 2009 Jun; 10 Suppl 6(Suppl 6):S22. PubMed ID: 19534748
    [TBL] [Abstract][Full Text] [Related]  

  • 3. In silico structural study of random amino acid sequence proteins not present in nature.
    Prymula K; Piwowar M; Kochanczyk M; Flis L; Malawski M; Szepieniec T; Evangelista G; Minervini G; Polticelli F; Wiśniowski Z; Sałapa K; Matczyńska E; Roterman I
    Chem Biodivers; 2009 Dec; 6(12):2311-36. PubMed ID: 20020465
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PSPP: a protein structure prediction pipeline for computing clusters.
    Lee MS; Bondugula R; Desai V; Zavaljevski N; Yeh IC; Wallqvist A; Reifman J
    PLoS One; 2009 Jul; 4(7):e6254. PubMed ID: 19606223
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
    Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
    BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Contact order and ab initio protein structure prediction.
    Bonneau R; Ruczinski I; Tsai J; Baker D
    Protein Sci; 2002 Aug; 11(8):1937-44. PubMed ID: 12142448
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.
    Braun T; Koehler Leman J; Lange OF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004661. PubMed ID: 26713437
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.
    Liu Y; Beveridge DL
    Proteins; 2002 Jan; 46(1):128-46. PubMed ID: 11746709
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ab initio modeling of small proteins by iterative TASSER simulations.
    Wu S; Skolnick J; Zhang Y
    BMC Biol; 2007 May; 5():17. PubMed ID: 17488521
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SimFold energy function for de novo protein structure prediction: consensus with Rosetta.
    Fujitsuka Y; Chikenji G; Takada S
    Proteins; 2006 Feb; 62(2):381-98. PubMed ID: 16294329
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.
    Bystroff C; Shao Y
    Bioinformatics; 2002; 18 Suppl 1():S54-61. PubMed ID: 12169531
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reduced Fragment Diversity for Alpha and Alpha-Beta Protein Structure Prediction using Rosetta.
    Abbass J; Nebel JC
    Protein Pept Lett; 2017; 24(3):215-222. PubMed ID: 27993124
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FALCON2: a web server for high-quality prediction of protein tertiary structures.
    Kong L; Ju F; Zhang H; Sun S; Bu D
    BMC Bioinformatics; 2021 Sep; 22(1):439. PubMed ID: 34525939
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study.
    Klepeis JL; Wei Y; Hecht MH; Floudas CA
    Proteins; 2005 Feb; 58(3):560-70. PubMed ID: 15609306
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rosetta in CASP4: progress in ab initio protein structure prediction.
    Bonneau R; Tsai J; Ruczinski I; Chivian D; Rohl C; Strauss CE; Baker D
    Proteins; 2001; Suppl 5():119-26. PubMed ID: 11835488
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Refinement of homology-based protein structures by molecular dynamics simulation techniques.
    Fan H; Mark AE
    Protein Sci; 2004 Jan; 13(1):211-20. PubMed ID: 14691236
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular replacement using ab initio polyalanine models generated with ROSETTA.
    Rigden DJ; Keegan RM; Winn MD
    Acta Crystallogr D Biol Crystallogr; 2008 Dec; 64(Pt 12):1288-91. PubMed ID: 19018106
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Customised fragments libraries for protein structure prediction based on structural class annotations.
    Abbass J; Nebel JC
    BMC Bioinformatics; 2015 Apr; 16(1):136. PubMed ID: 25925397
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).
    Hafner J
    J Phys Condens Matter; 2008 Feb; 20(6):060301. PubMed ID: 21693862
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiobjective evolutionary algorithm with many tables for purely ab initio protein structure prediction.
    Brasil CR; Delbem AC; da Silva FL
    J Comput Chem; 2013 Jul; 34(20):1719-34. PubMed ID: 23666867
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.