These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 19239315)

  • 1. An optimized replica exchange molecular dynamics method.
    Kamberaj H; van der Vaart A
    J Chem Phys; 2009 Feb; 130(7):074906. PubMed ID: 19239315
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploring the protein folding free energy landscape: coupling replica exchange method with P3ME/RESPA algorithm.
    Zhou R
    J Mol Graph Model; 2004 May; 22(5):451-63. PubMed ID: 15099840
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Calculation of absolute protein-ligand binding free energy using distributed replica sampling.
    Rodinger T; Howell PL; Pomès R
    J Chem Phys; 2008 Oct; 129(15):155102. PubMed ID: 19045232
    [TBL] [Abstract][Full Text] [Related]  

  • 4. New force replica exchange method and protein folding pathways probed by force-clamp technique.
    Kouza M; Hu CK; Li MS
    J Chem Phys; 2008 Jan; 128(4):045103. PubMed ID: 18248010
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multidimensional generalized-ensemble algorithms for complex systems.
    Mitsutake A; Okamoto Y
    J Chem Phys; 2009 Jun; 130(21):214105. PubMed ID: 19508054
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Convergence of replica exchange molecular dynamics.
    Zhang W; Wu C; Duan Y
    J Chem Phys; 2005 Oct; 123(15):154105. PubMed ID: 16252940
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Generalized-ensemble algorithms for molecular simulations of biopolymers.
    Mitsutake A; Sugita Y; Okamoto Y
    Biopolymers; 2001; 60(2):96-123. PubMed ID: 11455545
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Preserving the Boltzmann ensemble in replica-exchange molecular dynamics.
    Cooke B; Schmidler SC
    J Chem Phys; 2008 Oct; 129(16):164112. PubMed ID: 19045252
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S; Zacharias M
    J Struct Biol; 2009 Jun; 166(3):288-94. PubMed ID: 19272454
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Enhanced sampling of peptide and protein conformations using replica exchange simulations with a peptide backbone biasing-potential.
    Kannan S; Zacharias M
    Proteins; 2007 Feb; 66(3):697-706. PubMed ID: 17120231
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temperature weighted histogram analysis method, replica exchange, and transition paths.
    Gallicchio E; Andrec M; Felts AK; Levy RM
    J Phys Chem B; 2005 Apr; 109(14):6722-31. PubMed ID: 16851756
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations.
    Okamoto Y
    J Mol Graph Model; 2004 May; 22(5):425-39. PubMed ID: 15099838
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Influence of temperature, friction, and random forces on folding of the B-domain of staphylococcal protein A: all-atom molecular dynamics in implicit solvent.
    Jagielska A; Scheraga HA
    J Comput Chem; 2007 Apr; 28(6):1068-82. PubMed ID: 17279497
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Overcoming entropic barrier with coupled sampling at dual resolutions.
    Lwin TZ; Luo R
    J Chem Phys; 2005 Nov; 123(19):194904. PubMed ID: 16321110
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reversible folding simulation by hybrid Hamiltonian replica exchange.
    Xu W; Lai T; Yang Y; Mu Y
    J Chem Phys; 2008 May; 128(17):175105. PubMed ID: 18465944
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dissociation aided and side chain sampling enhanced Hamiltonian replica exchange.
    Mu Y
    J Chem Phys; 2009 Apr; 130(16):164107. PubMed ID: 19405561
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC; Lee MS; Olson MA
    J Phys Chem B; 2008 Nov; 112(47):15064-73. PubMed ID: 18959439
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A convective replica-exchange method for sampling new energy basins.
    Spill YG; Bouvier G; Nilges M
    J Comput Chem; 2013 Jan; 34(2):132-40. PubMed ID: 22961200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Temperature effects on the nucleation mechanism of protein folding and on the barrierless thermal denaturation of a native protein.
    Djikaev YS; Ruckenstein E
    Phys Chem Chem Phys; 2008 Nov; 10(41):6281-300. PubMed ID: 18936853
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Folding kinetics of proteins and cold denaturation.
    Collet O
    J Chem Phys; 2008 Oct; 129(15):155101. PubMed ID: 19045231
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.