These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

106 related articles for article (PubMed ID: 19244386)

  • 1. BISEN: Biochemical Simulation Environment.
    Vanlier J; Wu F; Qi F; Vinnakota KC; Han Y; Dash RK; Yang F; Beard DA
    Bioinformatics; 2009 Mar; 25(6):836-7. PubMed ID: 19244386
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cellware--a multi-algorithmic software for computational systems biology.
    Dhar P; Meng TC; Somani S; Ye L; Sairam A; Chitre M; Hao Z; Sakharkar K
    Bioinformatics; 2004 May; 20(8):1319-21. PubMed ID: 14871872
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Thermodynamically consistent Bayesian analysis of closed biochemical reaction systems.
    Jenkinson G; Zhong X; Goutsias J
    BMC Bioinformatics; 2010 Nov; 11():547. PubMed ID: 21054868
    [TBL] [Abstract][Full Text] [Related]  

  • 4. T-Pile--a package for thermodynamic calculations for biomolecules.
    Gront D; Kolinski A
    Bioinformatics; 2007 Jul; 23(14):1840-2. PubMed ID: 17510173
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MOCCASIN: converting MATLAB ODE models to SBML.
    Gómez HF; Hucka M; Keating SM; Nudelman G; Iber D; Sealfon SC
    Bioinformatics; 2016 Jun; 32(12):1905-6. PubMed ID: 26861819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sampling and sensitivity analyses tools (SaSAT) for computational modelling.
    Hoare A; Regan DG; Wilson DP
    Theor Biol Med Model; 2008 Feb; 5():4. PubMed ID: 18304361
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models.
    Wildenhain J; Fitzgerald N; Tyers M
    Bioinformatics; 2012 Aug; 28(16):2200-1. PubMed ID: 22711790
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BioShell--a package of tools for structural biology computations.
    Gront D; Kolinski A
    Bioinformatics; 2006 Mar; 22(5):621-2. PubMed ID: 16407320
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Model building and model checking for biochemical processes.
    Antoniotti M; Policriti A; Ugel N; Mishra B
    Cell Biochem Biophys; 2003; 38(3):271-86. PubMed ID: 12794268
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BioModME for building and simulating dynamic computational models of complex biological systems.
    Womack JA; Shah V; Audi SH; Terhune SS; Dash RK
    Bioinform Adv; 2024; 4(1):vbae023. PubMed ID: 38456125
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conservation analysis in biochemical networks: computational issues for software writers.
    Sauro HM; Ingalls B
    Biophys Chem; 2004 Apr; 109(1):1-15. PubMed ID: 15059656
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BioSimulator.jl: Stochastic simulation in Julia.
    Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
    Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MOST: a software environment for constraint-based metabolic modeling and strain design.
    Kelley JJ; Lane A; Li X; Mutthoju B; Maor S; Egen D; Lun DS
    Bioinformatics; 2015 Feb; 31(4):610-1. PubMed ID: 25677126
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.
    Ullah M; Schmidt H; Cho KH; Wolkenhauer O
    Syst Biol (Stevenage); 2006 Mar; 153(2):53-60. PubMed ID: 16986253
    [TBL] [Abstract][Full Text] [Related]  

  • 15. pSSAlib: The partial-propensity stochastic chemical network simulator.
    Ostrenko O; Incardona P; Ramaswamy R; Brusch L; Sbalzarini IF
    PLoS Comput Biol; 2017 Dec; 13(12):e1005865. PubMed ID: 29206229
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated construction and analysis of the design space for biochemical systems.
    Fasani RA; Savageau MA
    Bioinformatics; 2010 Oct; 26(20):2601-9. PubMed ID: 20823298
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Stochastic simulation GUI for biochemical networks.
    Vallabhajosyula RR; Sauro HM
    Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Generating rate equations for complex enzyme systems by a computer-assisted systematic method.
    Qi F; Dash RK; Han Y; Beard DA
    BMC Bioinformatics; 2009 Aug; 10():238. PubMed ID: 19653903
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.
    Adalsteinsson D; McMillen D; Elston TC
    BMC Bioinformatics; 2004 Mar; 5():24. PubMed ID: 15113411
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
    Drawert B; Hellander A; Bales B; Banerjee D; Bellesia G; Daigle BJ; Douglas G; Gu M; Gupta A; Hellander S; Horuk C; Nath D; Takkar A; Wu S; Lötstedt P; Krintz C; Petzold LR
    PLoS Comput Biol; 2016 Dec; 12(12):e1005220. PubMed ID: 27930676
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.