385 related articles for article (PubMed ID: 19265799)
1. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.
Berger MF; Bulyk ML
Nat Protoc; 2009; 4(3):393-411. PubMed ID: 19265799
[TBL] [Abstract][Full Text] [Related]
2. Protein binding microarrays for the characterization of DNA-protein interactions.
Bulyk ML
Adv Biochem Eng Biotechnol; 2007; 104():65-85. PubMed ID: 17290819
[TBL] [Abstract][Full Text] [Related]
3. Analysis of sequence specificities of DNA-binding proteins with protein binding microarrays.
Bulyk ML
Methods Enzymol; 2006; 410():279-99. PubMed ID: 16938556
[TBL] [Abstract][Full Text] [Related]
4. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
Berger MF; Philippakis AA; Qureshi AM; He FS; Estep PW; Bulyk ML
Nat Biotechnol; 2006 Nov; 24(11):1429-35. PubMed ID: 16998473
[TBL] [Abstract][Full Text] [Related]
5. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.
Mukherjee S; Berger MF; Jona G; Wang XS; Muzzey D; Snyder M; Young RA; Bulyk ML
Nat Genet; 2004 Dec; 36(12):1331-9. PubMed ID: 15543148
[TBL] [Abstract][Full Text] [Related]
6. Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays.
Bonham AJ; Neumann T; Tirrell M; Reich NO
Nucleic Acids Res; 2009 Jul; 37(13):e94. PubMed ID: 19487241
[TBL] [Abstract][Full Text] [Related]
7. Quantitative modeling of transcription factor binding specificities using DNA shape.
Zhou T; Shen N; Yang L; Abe N; Horton J; Mann RS; Bussemaker HJ; Gordân R; Rohs R
Proc Natl Acad Sci U S A; 2015 Apr; 112(15):4654-9. PubMed ID: 25775564
[TBL] [Abstract][Full Text] [Related]
8. A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.
Orenstein Y; Shamir R
Nucleic Acids Res; 2014 Apr; 42(8):e63. PubMed ID: 24500199
[TBL] [Abstract][Full Text] [Related]
9. Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors.
Godoy M; Franco-Zorrilla JM; Pérez-Pérez J; Oliveros JC; Lorenzo O; Solano R
Plant J; 2011 May; 66(4):700-11. PubMed ID: 21284757
[TBL] [Abstract][Full Text] [Related]
10. Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers.
Jiang B; Liu JS; Bulyk ML
Bioinformatics; 2013 Jun; 29(11):1390-8. PubMed ID: 23559638
[TBL] [Abstract][Full Text] [Related]
11. [Double-stranded DNA microarray: principal, techniques and applications].
Pan Y; Wang JK
Yi Chuan; 2013 Mar; 35(3):287-306. PubMed ID: 23575535
[TBL] [Abstract][Full Text] [Related]
12. High-resolution DNA-binding specificity analysis of yeast transcription factors.
Zhu C; Byers KJ; McCord RP; Shi Z; Berger MF; Newburger DE; Saulrieta K; Smith Z; Shah MV; Radhakrishnan M; Philippakis AA; Hu Y; De Masi F; Pacek M; Rolfs A; Murthy T; Labaer J; Bulyk ML
Genome Res; 2009 Apr; 19(4):556-66. PubMed ID: 19158363
[TBL] [Abstract][Full Text] [Related]
13. Design of compact, universal DNA microarrays for protein binding microarray experiments.
Philippakis AA; Qureshi AM; Berger MF; Bulyk ML
J Comput Biol; 2008 Sep; 15(7):655-65. PubMed ID: 18651798
[TBL] [Abstract][Full Text] [Related]
14. The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
Gong W; He K; Covington M; Dinesh-Kumar SP; Snyder M; Harmer SL; Zhu YX; Deng XW
Mol Plant; 2008 Jan; 1(1):27-41. PubMed ID: 19802365
[TBL] [Abstract][Full Text] [Related]
15. Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes.
Andrilenas KK; Penvose A; Siggers T
Brief Funct Genomics; 2015 Jan; 14(1):17-29. PubMed ID: 25431149
[TBL] [Abstract][Full Text] [Related]
16. Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.
Berger MF; Bulyk ML
Methods Mol Biol; 2006; 338():245-60. PubMed ID: 16888363
[TBL] [Abstract][Full Text] [Related]
17. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.
Newburger DE; Bulyk ML
Nucleic Acids Res; 2009 Jan; 37(Database issue):D77-82. PubMed ID: 18842628
[TBL] [Abstract][Full Text] [Related]
18. In vitro DNA-binding profile of transcription factors: methods and new insights.
Wang J; Lu J; Gu G; Liu Y
J Endocrinol; 2011 Jul; 210(1):15-27. PubMed ID: 21389103
[TBL] [Abstract][Full Text] [Related]
19. Accuracy and reproducibility of protein-DNA microarray technology.
Field S; Udalova I; Ragoussis J
Adv Biochem Eng Biotechnol; 2007; 104():87-110. PubMed ID: 17290820
[TBL] [Abstract][Full Text] [Related]
20. Stability selection for regression-based models of transcription factor-DNA binding specificity.
Mordelet F; Horton J; Hartemink AJ; Engelhardt BE; Gordân R
Bioinformatics; 2013 Jul; 29(13):i117-25. PubMed ID: 23812975
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]