BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 19272451)

  • 21. CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins.
    Jensen KB; Darnell RB
    Methods Mol Biol; 2008; 488():85-98. PubMed ID: 18982285
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Analysis of the nucleocytoplasmic shuttling RNA-binding protein HNRNPU using optimized HITS-CLIP method.
    Yugami M; Okano H; Nakanishi A; Yano M
    PLoS One; 2020; 15(4):e0231450. PubMed ID: 32302342
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol.
    Kammonen JI; Smolander OP; Sipilä T; Overmyer K; Auvinen P; Paulin L
    Anal Biochem; 2015 May; 477():38-40. PubMed ID: 25513723
    [TBL] [Abstract][Full Text] [Related]  

  • 24. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Proximity-CLIP and Expedited Non-Radioactive Library Preparation of Small RNA Footprints for Next-Generation Sequencing.
    Anastasakis D; Benhalevy D; Hafner M
    Curr Protoc Mol Biol; 2020 Jun; 131(1):e120. PubMed ID: 32438484
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
    Spitzer J; Hafner M; Landthaler M; Ascano M; Farazi T; Wardle G; Nusbaum J; Khorshid M; Burger L; Zavolan M; Tuschl T
    Methods Enzymol; 2014; 539():113-61. PubMed ID: 24581442
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Transcriptome-wide identification of RNA binding sites by CLIP-seq.
    Murigneux V; Saulière J; Roest Crollius H; Le Hir H
    Methods; 2013 Sep; 63(1):32-40. PubMed ID: 23545196
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Insights into the design and interpretation of iCLIP experiments.
    Haberman N; Huppertz I; Attig J; König J; Wang Z; Hauer C; Hentze MW; Kulozik AE; Le Hir H; Curk T; Sibley CR; Zarnack K; Ule J
    Genome Biol; 2017 Jan; 18(1):7. PubMed ID: 28093074
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Mapping of In Vivo RNA-Binding Sites by Ultraviolet (UV)-Cross-Linking Immunoprecipitation (CLIP).
    Darnell JC; Mele A; Hung KYS; Darnell RB
    Cold Spring Harb Protoc; 2018 Dec; 2018(12):. PubMed ID: 30510132
    [TBL] [Abstract][Full Text] [Related]  

  • 30. High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC).
    Sy B; Wong J; Granneman S; Tollervey D; Gally D; Tree JJ
    Methods Mol Biol; 2018; 1737():251-272. PubMed ID: 29484598
    [TBL] [Abstract][Full Text] [Related]  

  • 31. irCLIP platform for efficient characterization of protein-RNA interactions.
    Zarnegar BJ; Flynn RA; Shen Y; Do BT; Chang HY; Khavari PA
    Nat Methods; 2016 Jun; 13(6):489-92. PubMed ID: 27111506
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.
    Gillen AE; Yamamoto TM; Kline E; Hesselberth JR; Kabos P
    BMC Genomics; 2016 May; 17():338. PubMed ID: 27150721
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters.
    Billmeier M; Xu P
    Methods Mol Biol; 2017; 1580():45-57. PubMed ID: 28439825
    [TBL] [Abstract][Full Text] [Related]  

  • 34. CLIP (cross-linking and immunoprecipitation) identification of RNAs bound by a specific protein.
    Darnell RB
    Cold Spring Harb Protoc; 2012 Nov; 2012(11):1146-60. PubMed ID: 23118367
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Mapping RNA interactions to proteins in virions using CLIP-Seq.
    Fan B; Ni P; Kao CC
    Methods Mol Biol; 2015; 1297():213-24. PubMed ID: 25896006
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis.
    Xu Q; Wang C; Ling L; Yue Q; Liu M; Zhang S; Fu K; Ye L; Zheng K
    J Vis Exp; 2019 May; (147):. PubMed ID: 31132071
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
    Li L; Förstner KU; Chao Y
    Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The Future of Cross-Linking and Immunoprecipitation (CLIP).
    Ule J; Hwang HW; Darnell RB
    Cold Spring Harb Perspect Biol; 2018 Aug; 10(8):. PubMed ID: 30068528
    [TBL] [Abstract][Full Text] [Related]  

  • 39. CLIP: a method for identifying protein-RNA interaction sites in living cells.
    Ule J; Jensen K; Mele A; Darnell RB
    Methods; 2005 Dec; 37(4):376-86. PubMed ID: 16314267
    [TBL] [Abstract][Full Text] [Related]  

  • 40. High-throughput sequencing of RNA isolated by cross-linking and immunoprecipitation (HITS-CLIP) to determine sites of binding of CstF-64 on nascent RNAs.
    Grozdanov PN; Macdonald CC
    Methods Mol Biol; 2014; 1125():187-208. PubMed ID: 24590791
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.