BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 19274736)

  • 1. On the relation between residue flexibility and local solvent accessibility in proteins.
    Zhang H; Zhang T; Chen K; Shen S; Ruan J; Kurgan L
    Proteins; 2009 Aug; 76(3):617-36. PubMed ID: 19274736
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Combining prediction of secondary structure and solvent accessibility in proteins.
    Adamczak R; Porollo A; Meller J
    Proteins; 2005 May; 59(3):467-75. PubMed ID: 15768403
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility.
    Gao J; Zhang T; Zhang H; Shen S; Ruan J; Kurgan L
    Proteins; 2010 Jul; 78(9):2114-30. PubMed ID: 20455267
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accurate prediction of solvent accessibility using neural networks-based regression.
    Adamczak R; Porollo A; Meller J
    Proteins; 2004 Sep; 56(4):753-67. PubMed ID: 15281128
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression.
    Wang JY; Lee HM; Ahmad S
    Proteins; 2005 Nov; 61(3):481-91. PubMed ID: 16170780
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis.
    Wang JY; Ahmad S; Gromiha MM; Sarai A
    Biopolymers; 2004 Oct; 75(3):209-16. PubMed ID: 15378480
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved prediction of residue flexibility by embedding optimized amino acid grouping into RSA-based linear models.
    Zhang H; Kurgan L
    Amino Acids; 2014 Dec; 46(12):2665-80. PubMed ID: 25106508
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting protein secondary structure and solvent accessibility with an improved multiple linear regression method.
    Qin S; He Y; Pan XM
    Proteins; 2005 Nov; 61(3):473-80. PubMed ID: 16152601
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence.
    Gilis D; Rooman M
    J Mol Biol; 1997 Sep; 272(2):276-90. PubMed ID: 9299354
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Linear regression models for solvent accessibility prediction in proteins.
    Wagner M; Adamczak R; Porollo A; Meller J
    J Comput Biol; 2005 Apr; 12(3):355-69. PubMed ID: 15857247
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Real value prediction of solvent accessibility from amino acid sequence.
    Ahmad S; Gromiha MM; Sarai A
    Proteins; 2003 Mar; 50(4):629-35. PubMed ID: 12577269
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes.
    Wako H; Blundell TL
    J Mol Biol; 1994 May; 238(5):682-92. PubMed ID: 8182743
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QBES: predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization.
    Xu Z; Zhang C; Liu S; Zhou Y
    Proteins; 2006 Jun; 63(4):961-6. PubMed ID: 16514609
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prediction-based fingerprints of protein-protein interactions.
    Porollo A; Meller J
    Proteins; 2007 Feb; 66(3):630-45. PubMed ID: 17152079
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Conservation and prediction of solvent accessibility in protein families.
    Rost B; Sander C
    Proteins; 1994 Nov; 20(3):216-26. PubMed ID: 7892171
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequence based residue depth prediction using evolutionary information and predicted secondary structure.
    Zhang H; Zhang T; Chen K; Shen S; Ruan J; Kurgan L
    BMC Bioinformatics; 2008 Sep; 9():388. PubMed ID: 18803867
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein flexibility and rigidity predicted from sequence.
    Schlessinger A; Rost B
    Proteins; 2005 Oct; 61(1):115-26. PubMed ID: 16080156
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.
    Dor O; Zhou Y
    Proteins; 2007 Mar; 66(4):838-45. PubMed ID: 17177203
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SVM-Cabins: prediction of solvent accessibility using accumulation cutoff set and support vector machine.
    Wang JY; Lee HM; Ahmad S
    Proteins; 2007 Jul; 68(1):82-91. PubMed ID: 17436325
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fold recognition by concurrent use of solvent accessibility and residue depth.
    Liu S; Zhang C; Liang S; Zhou Y
    Proteins; 2007 Aug; 68(3):636-45. PubMed ID: 17510969
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.