These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

304 related articles for article (PubMed ID: 19275429)

  • 1. Statistical thermodynamics of residue fluctuations in native proteins.
    Yogurtcu ON; Gur M; Erman B
    J Chem Phys; 2009 Mar; 130(9):095103. PubMed ID: 19275429
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quasi-harmonic analysis of mode coupling in fluctuating native proteins.
    Gur M; Erman B
    Phys Biol; 2010 Oct; 7(4):046006. PubMed ID: 20978315
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Anisotropy and anharmonicity of atomic fluctuations in proteins: analysis of a molecular dynamics simulation.
    Ichiye T; Karplus M
    Proteins; 1987; 2(3):236-59. PubMed ID: 3447180
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC; Lee MS; Olson MA
    J Phys Chem B; 2008 Nov; 112(47):15064-73. PubMed ID: 18959439
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis.
    Hayward S; Kitao A; Go N
    Proteins; 1995 Oct; 23(2):177-86. PubMed ID: 8592699
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Jarzynski identity derived from general Hamiltonian or non-Hamiltonian dynamics reproducing NVT or NPT ensembles.
    Cuendet MA
    J Chem Phys; 2006 Oct; 125(14):144109. PubMed ID: 17042581
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Relationships between ligand binding sites, protein architecture and correlated paths of energy and conformational fluctuations.
    Erman B
    Phys Biol; 2011 Oct; 8(5):056003. PubMed ID: 21832802
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.
    Bahar I; Atilgan AR; Erman B
    Fold Des; 1997; 2(3):173-81. PubMed ID: 9218955
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Anharmonicity, mode-coupling and entropy in a fluctuating native protein.
    Kabakçioğlu A; Yuret D; Gür M; Erman B
    Phys Biol; 2010 Oct; 7(4):046005. PubMed ID: 20978313
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Immunoglobulin dynamics, conformational fluctuations, and nonlinear elasticity and their effects on stability.
    Kamerzell TJ; Ramsey JD; Middaugh CR
    J Phys Chem B; 2008 Mar; 112(10):3240-50. PubMed ID: 18284232
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dissipative electro-elastic network model of protein electrostatics.
    Martin DR; Ozkan SB; Matyushov DV
    Phys Biol; 2012 Jun; 9(3):036004. PubMed ID: 22555305
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generalized spring tensor models for protein fluctuation dynamics and conformation changes.
    Na H; Lin TL; Song G
    Adv Exp Med Biol; 2014; 805():107-35. PubMed ID: 24446359
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Time-dependent perturbation theory for vibrational energy relaxation and dephasing in peptides and proteins.
    Fujisaki H; Zhang Y; Straub JE
    J Chem Phys; 2006 Apr; 124(14):144910. PubMed ID: 16626248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding.
    Haliloglu T; Erman B
    Phys Rev Lett; 2009 Feb; 102(8):088103. PubMed ID: 19257794
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Effects of anharmonicity on nonadiabatic electron transfer: a model.
    Yeganeh S; Ratner MA
    J Chem Phys; 2006 Jan; 124(4):044108. PubMed ID: 16460150
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Relative Boltzmann entropy, evolution equations for fluctuations of thermodynamic intensive variables, and a statistical mechanical representation of the zeroth law of thermodynamics.
    Chan Eu B
    J Chem Phys; 2006 Aug; 125(6):64110. PubMed ID: 16942276
    [TBL] [Abstract][Full Text] [Related]  

  • 17. All-atom contact potential approach to protein thermostability analysis.
    Chen C; Li L; Xiao Y
    Biopolymers; 2007 Jan; 85(1):28-37. PubMed ID: 16964601
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tensorial elastic network model for protein dynamics: integration of the anisotropic network model with bond-bending and twist elasticities.
    Srivastava A; Halevi RB; Veksler A; Granek R
    Proteins; 2012 Dec; 80(12):2692-700. PubMed ID: 22847894
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A kinetic model for the internal motions of proteins: diffusion between multiple harmonic wells.
    Amadei A; de Groot BL; Ceruso MA; Paci M; Di Nola A; Berendsen HJ
    Proteins; 1999 May; 35(3):283-92. PubMed ID: 10328263
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Variational and perturbative formulations of quantum mechanical/molecular mechanical free energy with mean-field embedding and its analytical gradients.
    Yamamoto T
    J Chem Phys; 2008 Dec; 129(24):244104. PubMed ID: 19123492
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.