BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

91 related articles for article (PubMed ID: 19288474)

  • 21. A pharmacophore docking algorithm and its application to the cross-docking of 18 HIV-NNRTI's in their binding pockets.
    Daeyaert F; de Jonge M; Heeres J; Koymans L; Lewi P; Vinkers MH; Janssen PA
    Proteins; 2004 Feb; 54(3):526-33. PubMed ID: 14748000
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Nonequilibrium, multiple-timescale simulations of ligand-receptor interactions in structured protein systems.
    Zhang Y; Peters MH; Li Y
    Proteins; 2003 Aug; 52(3):339-48. PubMed ID: 12866048
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Considerations in compound database preparation--"hidden" impact on virtual screening results.
    Knox AJ; Meegan MJ; Carta G; Lloyd DG
    J Chem Inf Model; 2005; 45(6):1908-19. PubMed ID: 16309298
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Dynamic docking and electron-transfer between cytochrome b5 and a suite of myoglobin surface-charge mutants. Introduction of a functional-docking algorithm for protein-protein complexes.
    Liang ZX; Kurnikov IV; Nocek JM; Mauk AG; Beratan DN; Hoffman BM
    J Am Chem Soc; 2004 Mar; 126(9):2785-98. PubMed ID: 14995196
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Rational automatic search method for stable docking models of protein and ligand.
    Mizutani MY; Tomioka N; Itai A
    J Mol Biol; 1994 Oct; 243(2):310-26. PubMed ID: 7932757
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Lead finder: an approach to improve accuracy of protein-ligand docking, binding energy estimation, and virtual screening.
    Stroganov OV; Novikov FN; Stroylov VS; Kulkov V; Chilov GG
    J Chem Inf Model; 2008 Dec; 48(12):2371-85. PubMed ID: 19007114
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A scoring function for docking ligands to low-resolution protein structures.
    Bindewald E; Skolnick J
    J Comput Chem; 2005 Mar; 26(4):374-83. PubMed ID: 15651033
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Ligand dynamics in heme proteins observed by Fourier transform infrared spectroscopy at cryogenic temperatures.
    Nienhaus K; Nienhaus GU
    Methods Enzymol; 2008; 437():347-78. PubMed ID: 18433637
    [TBL] [Abstract][Full Text] [Related]  

  • 29. HierVLS hierarchical docking protocol for virtual ligand screening of large-molecule databases.
    Floriano WB; Vaidehi N; Zamanakos G; Goddard WA
    J Med Chem; 2004 Jan; 47(1):56-71. PubMed ID: 14695820
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.
    Pyrkov TV; Kosinsky YA; Arseniev AS; Priestle JP; Jacoby E; Efremov RG
    Proteins; 2007 Feb; 66(2):388-98. PubMed ID: 17094116
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Development and validation of a genetic algorithm for flexible docking.
    Jones G; Willett P; Glen RC; Leach AR; Taylor R
    J Mol Biol; 1997 Apr; 267(3):727-48. PubMed ID: 9126849
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A general and fast scoring function for protein-ligand interactions: a simplified potential approach.
    Muegge I; Martin YC
    J Med Chem; 1999 Mar; 42(5):791-804. PubMed ID: 10072678
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Ligand-protein docking using a quantum stochastic tunneling optimization method.
    Mancera RL; Källblad P; Todorov NP
    J Comput Chem; 2004 Apr; 25(6):858-64. PubMed ID: 15011257
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Improved protein-ligand docking using GOLD.
    Verdonk ML; Cole JC; Hartshorn MJ; Murray CW; Taylor RD
    Proteins; 2003 Sep; 52(4):609-23. PubMed ID: 12910460
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Protein-ligand docking against non-native protein conformers.
    Verdonk ML; Mortenson PN; Hall RJ; Hartshorn MJ; Murray CW
    J Chem Inf Model; 2008 Nov; 48(11):2214-25. PubMed ID: 18954138
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
    Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
    [TBL] [Abstract][Full Text] [Related]  

  • 38. SuperStar: improved knowledge-based interaction fields for protein binding sites.
    Verdonk ML; Cole JC; Watson P; Gillet V; Willett P
    J Mol Biol; 2001 Mar; 307(3):841-59. PubMed ID: 11273705
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Multiple active site corrections for docking and virtual screening.
    Vigers GP; Rizzi JP
    J Med Chem; 2004 Jan; 47(1):80-9. PubMed ID: 14695822
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
    Amini A; Shrimpton PJ; Muggleton SH; Sternberg MJ
    Proteins; 2007 Dec; 69(4):823-31. PubMed ID: 17910057
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 5.