154 related articles for article (PubMed ID: 19297352)
1. Identifying functional modules using expression profiles and confidence-scored protein interactions.
Ulitsky I; Shamir R
Bioinformatics; 2009 May; 25(9):1158-64. PubMed ID: 19297352
[TBL] [Abstract][Full Text] [Related]
2. Combining gene expression profiles and protein-protein interaction data to infer gene functions.
Tu K; Yu H; Li YX
J Biotechnol; 2006 Jul; 124(3):475-85. PubMed ID: 16530869
[TBL] [Abstract][Full Text] [Related]
3. Detecting functional modules in the yeast protein-protein interaction network.
Chen J; Yuan B
Bioinformatics; 2006 Sep; 22(18):2283-90. PubMed ID: 16837529
[TBL] [Abstract][Full Text] [Related]
4. PathGen: a transitive gene pathway generator.
Clement K; Gustafson N; Berbert A; Carroll H; Merris C; Olsen A; Clement M; Snell Q; Allen J; Roper RJ
Bioinformatics; 2010 Feb; 26(3):423-5. PubMed ID: 19965882
[TBL] [Abstract][Full Text] [Related]
5. Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.
Hirose O; Yoshida R; Imoto S; Yamaguchi R; Higuchi T; Charnock-Jones DS; Print C; Miyano S
Bioinformatics; 2008 Apr; 24(7):932-42. PubMed ID: 18292116
[TBL] [Abstract][Full Text] [Related]
6. Exploring the functional landscape of gene expression: directed search of large microarray compendia.
Hibbs MA; Hess DC; Myers CL; Huttenhower C; Li K; Troyanskaya OG
Bioinformatics; 2007 Oct; 23(20):2692-9. PubMed ID: 17724061
[TBL] [Abstract][Full Text] [Related]
7. CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.
Ma X; Lee H; Wang L; Sun F
Bioinformatics; 2007 Jan; 23(2):215-21. PubMed ID: 17098772
[TBL] [Abstract][Full Text] [Related]
8. ADGO: analysis of differentially expressed gene sets using composite GO annotation.
Nam D; Kim SB; Kim SK; Yang S; Kim SY; Chu IS
Bioinformatics; 2006 Sep; 22(18):2249-53. PubMed ID: 16837524
[TBL] [Abstract][Full Text] [Related]
9. Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
Del Mondo G; Eveillard D; Rusu I
Bioinformatics; 2009 Apr; 25(7):926-32. PubMed ID: 19223451
[TBL] [Abstract][Full Text] [Related]
10. SEGS: search for enriched gene sets in microarray data.
Trajkovski I; Lavrac N; Tolar J
J Biomed Inform; 2008 Aug; 41(4):588-601. PubMed ID: 18234563
[TBL] [Abstract][Full Text] [Related]
11. Polynomial model approach for resynchronization analysis of cell-cycle gene expression data.
Qiu P; Wang ZJ; Liu KJ
Bioinformatics; 2006 Apr; 22(8):959-66. PubMed ID: 16434439
[TBL] [Abstract][Full Text] [Related]
12. Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.
Ray SS; Bandyopadhyay S; Pal SK
IEEE Trans Biomed Eng; 2009 Feb; 56(2):229-36. PubMed ID: 19272921
[TBL] [Abstract][Full Text] [Related]
13. Functional centrality: detecting lethality of proteins in protein interaction networks.
Tew KL; Li XL; Tan SH
Genome Inform; 2007; 19():166-77. PubMed ID: 18546514
[TBL] [Abstract][Full Text] [Related]
14. M@IA: a modular open-source application for microarray workflow and integrative datamining.
Le Béchec A; Zindy P; Sierocinski T; Petritis D; Bihouée A; Le Meur N; Léger J; Théret N
In Silico Biol; 2008; 8(1):63-9. PubMed ID: 18430991
[TBL] [Abstract][Full Text] [Related]
15. DAPID: a 3D-domain annotated protein-protein interaction database.
Chen YC; Chen HC; Yang JM
Genome Inform; 2006; 17(2):206-15. PubMed ID: 17503393
[TBL] [Abstract][Full Text] [Related]
16. MMG: a probabilistic tool to identify submodules of metabolic pathways.
Sanguinetti G; Noirel J; Wright PC
Bioinformatics; 2008 Apr; 24(8):1078-84. PubMed ID: 18292114
[TBL] [Abstract][Full Text] [Related]
17. Iterative cluster analysis of protein interaction data.
Arnau V; Mars S; Marín I
Bioinformatics; 2005 Feb; 21(3):364-78. PubMed ID: 15374873
[TBL] [Abstract][Full Text] [Related]
18. Assessment of protein set coherence using functional annotations.
Chagoyen M; Carazo JM; Pascual-Montano A
BMC Bioinformatics; 2008 Oct; 9():444. PubMed ID: 18937846
[TBL] [Abstract][Full Text] [Related]
19. A protein interaction network associated with asthma.
Hwang S; Son SW; Kim SC; Kim YJ; Jeong H; Lee D
J Theor Biol; 2008 Jun; 252(4):722-31. PubMed ID: 18395227
[TBL] [Abstract][Full Text] [Related]
20. Reconstruction of genetic association networks from microarray data: a partial least squares approach.
Pihur V; Datta S; Datta S
Bioinformatics; 2008 Feb; 24(4):561-8. PubMed ID: 18204062
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]