369 related articles for article (PubMed ID: 19326878)
1. Activity, folding and Z-DNA formation of the 8-17 DNAzyme in the presence of monovalent ions.
Mazumdar D; Nagraj N; Kim HK; Meng X; Brown AK; Sun Q; Li W; Lu Y
J Am Chem Soc; 2009 Apr; 131(15):5506-15. PubMed ID: 19326878
[TBL] [Abstract][Full Text] [Related]
2. Metal-ion-dependent folding of a uranyl-specific DNAzyme: insight into function from fluorescence resonance energy transfer studies.
He Y; Lu Y
Chemistry; 2011 Dec; 17(49):13732-42. PubMed ID: 22052817
[TBL] [Abstract][Full Text] [Related]
3. Existence of efficient divalent metal ion-catalyzed and inefficient divalent metal ion-independent channels in reactions catalyzed by a hammerhead ribozyme.
Zhou JM; Zhou DM; Takagi Y; Kasai Y; Inoue A; Baba T; Taira K
Nucleic Acids Res; 2002 Jun; 30(11):2374-82. PubMed ID: 12034824
[TBL] [Abstract][Full Text] [Related]
4. Metal-dependent global folding and activity of the 8-17 DNAzyme studied by fluorescence resonance energy transfer.
Kim HK; Liu J; Li J; Nagraj N; Li M; Pavot CM; Lu Y
J Am Chem Soc; 2007 May; 129(21):6896-902. PubMed ID: 17488081
[TBL] [Abstract][Full Text] [Related]
5. EPR spectroscopic analysis of U7 hammerhead ribozyme dynamics during metal ion induced folding.
Edwards TE; Sigurdsson ST
Biochemistry; 2005 Sep; 44(38):12870-8. PubMed ID: 16171402
[TBL] [Abstract][Full Text] [Related]
6. The hammerhead cleavage reaction in monovalent cations.
Curtis EA; Bartel DP
RNA; 2001 Apr; 7(4):546-52. PubMed ID: 11345433
[TBL] [Abstract][Full Text] [Related]
7. A lead-dependent DNAzyme with a two-step mechanism.
Brown AK; Li J; Pavot CM; Lu Y
Biochemistry; 2003 Jun; 42(23):7152-61. PubMed ID: 12795611
[TBL] [Abstract][Full Text] [Related]
8. A new Pb
Li Y; Du S; Chai Z; He J
Bioorg Med Chem; 2020 Nov; 28(22):115796. PubMed ID: 33038786
[TBL] [Abstract][Full Text] [Related]
9. Active-site monovalent cations revealed in a 1.55-Å-resolution hammerhead ribozyme structure.
Anderson M; Schultz EP; Martick M; Scott WG
J Mol Biol; 2013 Oct; 425(20):3790-8. PubMed ID: 23711504
[TBL] [Abstract][Full Text] [Related]
10. Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme.
Boots JL; Canny MD; Azimi E; Pardi A
RNA; 2008 Oct; 14(10):2212-22. PubMed ID: 18755844
[TBL] [Abstract][Full Text] [Related]
11. Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations.
O'Rear JL; Wang S; Feig AL; Beigelman L; Uhlenbeck OC; Herschlag D
RNA; 2001 Apr; 7(4):537-45. PubMed ID: 11345432
[TBL] [Abstract][Full Text] [Related]
12. The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone.
Murray JB; Seyhan AA; Walter NG; Burke JM; Scott WG
Chem Biol; 1998 Oct; 5(10):587-95. PubMed ID: 9818150
[TBL] [Abstract][Full Text] [Related]
13. Influence of monovalent metal ions on metal binding and catalytic activity of the 10-23 DNAzyme.
Rosenbach H; Borggräfe J; Victor J; Wuebben C; Schiemann O; Hoyer W; Steger G; Etzkorn M; Span I
Biol Chem; 2020 Nov; 402(1):99-111. PubMed ID: 33544488
[TBL] [Abstract][Full Text] [Related]
14. Dissecting metal ion-dependent folding and catalysis of a single DNAzyme.
Kim HK; Rasnik I; Liu J; Ha T; Lu Y
Nat Chem Biol; 2007 Dec; 3(12):763-8. PubMed ID: 17965708
[TBL] [Abstract][Full Text] [Related]
15. Global Folding of a Na
He Y; Zhou Y; Chen D; Liu J
Chembiochem; 2019 Feb; 20(3):385-393. PubMed ID: 30398697
[TBL] [Abstract][Full Text] [Related]
16. Analyses of kinetic solvent isotope effects of a hammerhead ribozyme reaction in NH4+ and Li+ ions.
Takagi Y; Taira K
Nucleic Acids Res Suppl; 2002; (2):273-4. PubMed ID: 12903210
[TBL] [Abstract][Full Text] [Related]
17. A Silver-Specific DNAzyme with a New Silver Aptamer and Salt-Promoted Activity.
Saran R; Kleinke K; Zhou W; Yu T; Liu J
Biochemistry; 2017 Apr; 56(14):1955-1962. PubMed ID: 28345892
[TBL] [Abstract][Full Text] [Related]
18. The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor.
Wieruszewska J; Pawłowicz A; Połomska E; Pasternak K; Gdaniec Z; Andrałojć W
Nat Commun; 2024 May; 15(1):4218. PubMed ID: 38760331
[TBL] [Abstract][Full Text] [Related]
19. Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism.
Nakano S; Cerrone AL; Bevilacqua PC
Biochemistry; 2003 Mar; 42(10):2982-94. PubMed ID: 12627964
[TBL] [Abstract][Full Text] [Related]
20. Probing metal binding in the 8-17 DNAzyme by TbIII luminescence spectroscopy.
Kim HK; Li J; Nagraj N; Lu Y
Chemistry; 2008; 14(28):8696-703. PubMed ID: 18688837
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
