131 related articles for article (PubMed ID: 19351619)
1. ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.
Kim YJ; Teletia N; Ruotti V; Maher CA; Chinnaiyan AM; Stewart R; Thomson JA; Patel JM
Bioinformatics; 2009 Jun; 25(11):1424-5. PubMed ID: 19351619
[TBL] [Abstract][Full Text] [Related]
2. BatMis: a fast algorithm for k-mismatch mapping.
Tennakoon C; Purbojati RW; Sung WK
Bioinformatics; 2012 Aug; 28(16):2122-8. PubMed ID: 22689389
[TBL] [Abstract][Full Text] [Related]
3. MOM: maximum oligonucleotide mapping.
Eaves HL; Gao Y
Bioinformatics; 2009 Apr; 25(7):969-70. PubMed ID: 19228804
[TBL] [Abstract][Full Text] [Related]
4. Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H; Durbin R
Bioinformatics; 2009 Jul; 25(14):1754-60. PubMed ID: 19451168
[TBL] [Abstract][Full Text] [Related]
5. SRmapper: a fast and sensitive genome-hashing alignment tool.
Gontarz PM; Berger J; Wong CF
Bioinformatics; 2013 Feb; 29(3):316-21. PubMed ID: 23267171
[TBL] [Abstract][Full Text] [Related]
6. BamView: viewing mapped read alignment data in the context of the reference sequence.
Carver T; Böhme U; Otto TD; Parkhill J; Berriman M
Bioinformatics; 2010 Mar; 26(5):676-7. PubMed ID: 20071372
[TBL] [Abstract][Full Text] [Related]
7. PRIMEX: rapid identification of oligonucleotide matches in whole genomes.
Lexa M; Valle G
Bioinformatics; 2003 Dec; 19(18):2486-8. PubMed ID: 14668240
[TBL] [Abstract][Full Text] [Related]
8. Matching Reads to Many Genomes with the
Mun T; Kuhnle A; Boucher C; Gagie T; Langmead B; Manzini G
J Comput Biol; 2020 Apr; 27(4):514-518. PubMed ID: 32181686
[TBL] [Abstract][Full Text] [Related]
9. PASS: a program to align short sequences.
Campagna D; Albiero A; Bilardi A; Caniato E; Forcato C; Manavski S; Vitulo N; Valle G
Bioinformatics; 2009 Apr; 25(7):967-8. PubMed ID: 19218350
[TBL] [Abstract][Full Text] [Related]
10. Re-alignment of the unmapped reads with base quality score.
Peng X; Wang J; Zhang Z; Xiao Q; Li M; Pan Y
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S8. PubMed ID: 25860434
[TBL] [Abstract][Full Text] [Related]
11. Simultaneous alignment of short reads against multiple genomes.
Schneeberger K; Hagmann J; Ossowski S; Warthmann N; Gesing S; Kohlbacher O; Weigel D
Genome Biol; 2009; 10(9):R98. PubMed ID: 19761611
[TBL] [Abstract][Full Text] [Related]
12. The Sequence Alignment/Map format and SAMtools.
Li H; Handsaker B; Wysoker A; Fennell T; Ruan J; Homer N; Marth G; Abecasis G; Durbin R;
Bioinformatics; 2009 Aug; 25(16):2078-9. PubMed ID: 19505943
[TBL] [Abstract][Full Text] [Related]
13. Aligning short sequencing reads with Bowtie.
Langmead B
Curr Protoc Bioinformatics; 2010 Dec; Chapter 11():Unit 11.7. PubMed ID: 21154709
[TBL] [Abstract][Full Text] [Related]
14. Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.
Ratnakumar A; McWilliam S; Barris W; Dalrymple BP
BMC Genomics; 2010 Aug; 11():458. PubMed ID: 20678236
[TBL] [Abstract][Full Text] [Related]
15. Simultaneous identification of long similar substrings in large sets of sequences.
Kleffe J; Möller F; Wittig B
BMC Bioinformatics; 2007 May; 8 Suppl 5(Suppl 5):S7. PubMed ID: 17570866
[TBL] [Abstract][Full Text] [Related]
16. SeqTools: visual tools for manual analysis of sequence alignments.
Barson G; Griffiths E
BMC Res Notes; 2016 Jan; 9():39. PubMed ID: 26801397
[TBL] [Abstract][Full Text] [Related]
17. MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence.
Turki T; Roshan U
BMC Genomics; 2014 Nov; 15(1):969. PubMed ID: 25398475
[TBL] [Abstract][Full Text] [Related]
18. Mclip: motif detection based on cliques of gapped local profile-to-profile alignments.
Frickey T; Weiller G
Bioinformatics; 2007 Feb; 23(4):502-3. PubMed ID: 17127680
[TBL] [Abstract][Full Text] [Related]
19. ZOOM! Zillions of oligos mapped.
Lin H; Zhang Z; Zhang MQ; Ma B; Li M
Bioinformatics; 2008 Nov; 24(21):2431-7. PubMed ID: 18684737
[TBL] [Abstract][Full Text] [Related]
20. Improve homology search sensitivity of PacBio data by correcting frameshifts.
Du N; Sun Y
Bioinformatics; 2016 Sep; 32(17):i529-i537. PubMed ID: 27587671
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]