431 related articles for article (PubMed ID: 19358741)
1. flowCore: a Bioconductor package for high throughput flow cytometry.
Hahne F; LeMeur N; Brinkman RR; Ellis B; Haaland P; Sarkar D; Spidlen J; Strain E; Gentleman R
BMC Bioinformatics; 2009 Apr; 10():106. PubMed ID: 19358741
[TBL] [Abstract][Full Text] [Related]
2. Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data.
Hermida L; Poussin C; Stadler MB; Gubian S; Sewer A; Gaidatzis D; Hotz HR; Martin F; Belcastro V; Cano S; Peitsch MC; Hoeng J
BMC Genomics; 2013 Jul; 14():514. PubMed ID: 23895370
[TBL] [Abstract][Full Text] [Related]
3. OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis.
Finak G; Frelinger J; Jiang W; Newell EW; Ramey J; Davis MM; Kalams SA; De Rosa SC; Gottardo R
PLoS Comput Biol; 2014 Aug; 10(8):e1003806. PubMed ID: 25167361
[TBL] [Abstract][Full Text] [Related]
4. High-throughput bioinformatics with the Cyrille2 pipeline system.
Fiers MW; van der Burgt A; Datema E; de Groot JC; van Ham RC
BMC Bioinformatics; 2008 Feb; 9():96. PubMed ID: 18269742
[TBL] [Abstract][Full Text] [Related]
5. TASBE Flow Analytics: A Package for Calibrated Flow Cytometry Analysis.
Beal J; Overney C; Adler A; Yaman F; Tiberio L; Samineni M
ACS Synth Biol; 2019 Jul; 8(7):1524-1529. PubMed ID: 31053031
[TBL] [Abstract][Full Text] [Related]
6. Using flowViz to visualize flow cytometry data.
Sarkar D; Le Meur N; Gentleman R
Bioinformatics; 2008 Mar; 24(6):878-9. PubMed ID: 18245128
[TBL] [Abstract][Full Text] [Related]
7. Analysis of High-Throughput Flow Cytometry Data Using plateCore.
Strain E; Hahne F; Brinkman RR; Haaland P
Adv Bioinformatics; 2009; 2009():356141. PubMed ID: 19956418
[TBL] [Abstract][Full Text] [Related]
8. The Gaggle: an open-source software system for integrating bioinformatics software and data sources.
Shannon PT; Reiss DJ; Bonneau R; Baliga NS
BMC Bioinformatics; 2006 Mar; 7():176. PubMed ID: 16569235
[TBL] [Abstract][Full Text] [Related]
9. ggCyto: next generation open-source visualization software for cytometry.
Van P; Jiang W; Gottardo R; Finak G
Bioinformatics; 2018 Nov; 34(22):3951-3953. PubMed ID: 29868771
[TBL] [Abstract][Full Text] [Related]
10. Computational methods for evaluation of cell-based data assessment--Bioconductor.
Le Meur N
Curr Opin Biotechnol; 2013 Feb; 24(1):105-11. PubMed ID: 23062230
[TBL] [Abstract][Full Text] [Related]
11. Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.
Wilson CL; Miller CJ
Bioinformatics; 2005 Sep; 21(18):3683-5. PubMed ID: 16076888
[TBL] [Abstract][Full Text] [Related]
12. Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.
Chiang T; Li N; Orchard S; Kerrien S; Hermjakob H; Gentleman R; Huber W
Bioinformatics; 2008 Apr; 24(8):1100-1. PubMed ID: 17989096
[TBL] [Abstract][Full Text] [Related]
13. multiplierz: an extensible API based desktop environment for proteomics data analysis.
Parikh JR; Askenazi M; Ficarro SB; Cashorali T; Webber JT; Blank NC; Zhang Y; Marto JA
BMC Bioinformatics; 2009 Oct; 10():364. PubMed ID: 19874609
[TBL] [Abstract][Full Text] [Related]
14. A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data.
Corradi L; Fato M; Porro I; Scaglione S; Torterolo L
BMC Bioinformatics; 2008 Nov; 9():480. PubMed ID: 19014540
[TBL] [Abstract][Full Text] [Related]
15. Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W; Carey VJ; Gentleman R; Anders S; Carlson M; Carvalho BS; Bravo HC; Davis S; Gatto L; Girke T; Gottardo R; Hahne F; Hansen KD; Irizarry RA; Lawrence M; Love MI; MacDonald J; Obenchain V; Oleś AK; Pagès H; Reyes A; Shannon P; Smyth GK; Tenenbaum D; Waldron L; Morgan M
Nat Methods; 2015 Feb; 12(2):115-21. PubMed ID: 25633503
[TBL] [Abstract][Full Text] [Related]
16. Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.
Shah AR; Singhal M; Klicker KR; Stephan EG; Wiley HS; Waters KM
Bioinformatics; 2007 Apr; 23(7):906-9. PubMed ID: 17324940
[TBL] [Abstract][Full Text] [Related]
17. Phaedra, a protocol-driven system for analysis and validation of high-content imaging and flow cytometry.
Cornelissen F; Cik M; Gustin E
J Biomol Screen; 2012 Apr; 17(4):496-506. PubMed ID: 22233649
[TBL] [Abstract][Full Text] [Related]
18. An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators.
Gautier L
BMC Bioinformatics; 2010 Dec; 11 Suppl 12(Suppl 12):S11. PubMed ID: 21210978
[TBL] [Abstract][Full Text] [Related]
19. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files.
Roser LG; Agüero F; Sánchez DO
BMC Bioinformatics; 2019 Jun; 20(1):361. PubMed ID: 31253077
[TBL] [Abstract][Full Text] [Related]
20. Importing MAGE-ML format microarray data into BioConductor.
Durinck S; Allemeersch J; Carey VJ; Moreau Y; De Moor B
Bioinformatics; 2004 Dec; 20(18):3641-2. PubMed ID: 15256416
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
