These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 19361325)

  • 1. CUSA and CUDE: GPU-accelerated methods for estimating solvent accessible surface area and desolvation.
    Dynerman D; Butzlaff E; Mitchell JC
    J Comput Biol; 2009 Apr; 16(4):523-37. PubMed ID: 19361325
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accelerating the Generalized Born with Molecular Volume and Solvent Accessible Surface Area Implicit Solvent Model Using Graphics Processing Units.
    Gong X; Chiricotto M; Liu X; Nordquist E; Feig M; Brooks CL; Chen J
    J Comput Chem; 2020 Mar; 41(8):830-838. PubMed ID: 31875339
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GPU-accelerated atom and dynamic bond visualization using hyperballs: a unified algorithm for balls, sticks, and hyperboloids.
    Chavent M; Vanel A; Tek A; Levy B; Robert S; Raffin B; Baaden M
    J Comput Chem; 2011 Oct; 32(13):2924-35. PubMed ID: 21735559
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Derivatives of molecular surface area and volume: simple and exact analytical formulas.
    Klenin KV; Tristram F; Strunk T; Wenzel W
    J Comput Chem; 2011 Sep; 32(12):2647-53. PubMed ID: 21656788
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accelerating molecular dynamic simulation on graphics processing units.
    Friedrichs MS; Eastman P; Vaidyanathan V; Houston M; Legrand S; Beberg AL; Ensign DL; Bruns CM; Pande VS
    J Comput Chem; 2009 Apr; 30(6):864-72. PubMed ID: 19191337
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fast Pairwise Approximation of Solvent Accessible Surface Area for Implicit Solvent Simulations of Proteins on CPUs and GPUs.
    Huang H; Simmerling C
    J Chem Theory Comput; 2018 Nov; 14(11):5797-5814. PubMed ID: 30303377
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantum Chemistry for Solvated Molecules on Graphical Processing Units Using Polarizable Continuum Models.
    Liu F; Luehr N; Kulik HJ; Martínez TJ
    J Chem Theory Comput; 2015 Jul; 11(7):3131-44. PubMed ID: 26575750
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software.
    Schmid N; Bötschi M; van Gunsteren WF
    J Comput Chem; 2010 Jun; 31(8):1636-43. PubMed ID: 20127715
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pairwise sequence alignment for very long sequences on GPUs.
    Li J; Ranka S; Sahni S
    Int J Bioinform Res Appl; 2014; 10(4-5):345-68. PubMed ID: 24989857
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Pairwise calculation of protein solvent-accessible surface areas.
    Street AG; Mayo SL
    Fold Des; 1998; 3(4):253-8. PubMed ID: 9710572
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FURSMASA: a new approach to rapid scoring functions that uses a MD-averaged potential energy grid and a solvent-accessible surface area term with parameters GA fit to experimental data.
    Pearlman DA; Rao BG; Charifson P
    Proteins; 2008 May; 71(3):1519-38. PubMed ID: 18300249
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GPU/CPU Algorithm for Generalized Born/Solvent-Accessible Surface Area Implicit Solvent Calculations.
    Tanner DE; Phillips JC; Schulten K
    J Chem Theory Comput; 2012 Jul; 8(7):2521-2530. PubMed ID: 23049488
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exploiting graphics processing units for computational biology and bioinformatics.
    Payne JL; Sinnott-Armstrong NA; Moore JH
    Interdiscip Sci; 2010 Sep; 2(3):213-20. PubMed ID: 20658333
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accelerating two algorithms for large-scale compound selection on GPUs.
    Liao Q; Wang J; Watson IA
    J Chem Inf Model; 2011 May; 51(5):1017-24. PubMed ID: 21526799
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Solvent accessible surface area-based hot-spot detection methods for protein-protein and protein-nucleic acid interfaces.
    Munteanu CR; Pimenta AC; Fernandez-Lozano C; Melo A; Cordeiro MN; Moreira IS
    J Chem Inf Model; 2015 May; 55(5):1077-86. PubMed ID: 25845030
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GPU-accelerated molecular modeling coming of age.
    Stone JE; Hardy DJ; Ufimtsev IS; Schulten K
    J Mol Graph Model; 2010 Sep; 29(2):116-25. PubMed ID: 20675161
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications.
    Lei G; Dou Y; Wan W; Xia F; Li R; Ma M; Zou D
    BMC Genomics; 2012; 13 Suppl 1(Suppl 1):S14. PubMed ID: 22369626
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units.
    Cickovski T; Flor T; Irving-Sachs G; Novikov P; Parda J; Narasimhan G
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):445-54. PubMed ID: 26357230
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast accurate evaluation of protein solvent exposure.
    Zhang N; Zeng C; Wingreen NS
    Proteins; 2004 Nov; 57(3):565-76. PubMed ID: 15382246
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A parallel approximate string matching under Levenshtein distance on graphics processing units using warp-shuffle operations.
    Ho T; Oh SR; Kim H
    PLoS One; 2017; 12(10):e0186251. PubMed ID: 29016700
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.